Scaffold Ga0265294_10172044

Overview

Basic Information

• Taxon OID: 3300028602
• Scaffold ID: Ga0265294_10172044
• Source Dataset Name: Groundwater microbial communities from a municipal landfill in Southern Ontario, Canada - Pumphouse #3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1598
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater → Leachate And Groundwater Microbial Communities From A Municipal Landfill And Adjacent Aquifer In Southern Ontario, Canada

Source Dataset Sampling Location

• Location Name: Canada: Waterloo, Ontario
• Coordinates
  • Lat. (^o): 43.442
  • Long. (^o): -80.577

Associated Families

Family	Category	Number of Sequences	3D Structure?
F064748	Metagenome / Metatranscriptome	128	Y
F078879	Metagenome / Metatranscriptome	116	N
F103501	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0265294_101720444	F064748	AGG	MKKYRFIGNMEDVTPCGNMDEGCIIAGCKGKTWGQCHFDPNLNLLSSGNEYYEEVRDTVFRVEKDGAYSNGGLYPLFSDNGKLWMEAGHLKYHFKQRIAYNSETYAPIYLYQDYPEGAEVVEYALVEVKRTPVKKFVEGGE
Ga0265294_101720445	F103501	AGGA	MVKNIILVGIVSYDDEYDLWCVGEDYIENIISDFEDKKVVVTITEI
Ga0265294_101720446	F078879	N/A	RCKENMTPDISDEVKEGYDLLEGIGIVERTESGQYYPTEVGGAIIYAVLCKQMLGASEDDYKSVESQQVMMNRLEEMDLVEQGDESYIITIEGFIAFFTNLAHDCPYREEFLDWLALATAELAEVMEQP