Scaffold Ga0265294_10027230

Overview

Basic Information

• Taxon OID: 3300028602
• Scaffold ID: Ga0265294_10027230
• Source Dataset Name: Groundwater microbial communities from a municipal landfill in Southern Ontario, Canada - Pumphouse #3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5640
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (93.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater → Leachate And Groundwater Microbial Communities From A Municipal Landfill And Adjacent Aquifer In Southern Ontario, Canada

Source Dataset Sampling Location

• Location Name: Canada: Waterloo, Ontario
• Coordinates
  • Lat. (^o): 43.442
  • Long. (^o): -80.577

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003987	Metagenome / Metatranscriptome	458	Y
F004383	Metagenome / Metatranscriptome	440	Y
F022442	Metagenome / Metatranscriptome	214	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0265294_1002723011	F003987	GGAGG	MIPALPCGTFADSETPAGAFYVAAFEPGDAPHHVGEYRIDVAIRALQALKACGYDDVEVGGIERSGRTHLLLVGLDGEARFGDRQLGCVAVAPVGVSE
Ga0265294_1002723012	F004383	GGAGG	MHCDCETPCRECKEEEVEIVDETPLLLESAFMARIKADEYREALAALQKEFDERPDVVELKRQIEYYEEARRRRIAQAKATGITKQGSFLLKVRTRKTRTVIPERFFARFGAETFVKCSTVAIGKAEAAVGKGTFDDCCEVEVKEIGVSVEYERPEAAE
Ga0265294_100272302	F022442	AGGAGG	MAFRRAGEARLDLYRDALLLDIGADTFVVPLDRLADLTARRRREVVVSRRYWGAAPGTFEDVEQGLRLRRSRTDQALVLTMVEGVFTLPIYQVHEVREGIQESCPISRLVTDARQLDDATSKQTMLPGVRA