Scaffold Ga0265294_10023527

Overview

Basic Information

• Taxon OID: 3300028602
• Scaffold ID: Ga0265294_10023527
• Source Dataset Name: Groundwater microbial communities from a municipal landfill in Southern Ontario, Canada - Pumphouse #3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6212
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (91.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater → Leachate And Groundwater Microbial Communities From A Municipal Landfill And Adjacent Aquifer In Southern Ontario, Canada

Source Dataset Sampling Location

• Location Name: Canada: Waterloo, Ontario
• Coordinates
  • Lat. (^o): 43.442
  • Long. (^o): -80.577

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029451	Metagenome / Metatranscriptome	188	N
F054066	Metagenome / Metatranscriptome	140	N
F054970	Metagenome / Metatranscriptome	139	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0265294_1002352710	F054066	AGG	MFGMTRKPKELNRFRVGKGLPGVKAAMYRFVNKSYLDIRIYRGYREVTRIVTPDTGMRRFVVDDVGAFVMPNEEQMLRQLHDRHALYITYNINSSAPGEVTEELAPVAFVYPPLSPAEFQTELEAQTVADLLAETEKDMSWIWLLAGGAVLIFVLILLFGGV
Ga0265294_100235272	F054970	GAGG	MTNNTPEDLQELVETLLVDLELNKDCSDWDCSECPFRLKESEEDPRYGTHNCGWLLLKSATSKILRK
Ga0265294_100235279	F029451	GGAGG	MAVDFEDLIASTSSTGGKPSIIEALLSTVDAIFTNNRMLQRSRLSSRNIRGVVRVIGSQSFLRARLERSYKPFLDPDTGEFTYARYDNRVLTSVCEGALSGRISLDGKSRDEIIRIFQAVGNTGQEQPTGRGGGILGRFDY