NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0265295_1146852

Scaffold Ga0265295_1146852


Overview

Basic Information
Taxon OID3300028601 Open in IMG/M
Scaffold IDGa0265295_1146852 Open in IMG/M
Source Dataset NameLeachate microbial communities from a municipal landfill in Southern Ontario, Canada - Methane capture system biofilm
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1041
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Solid Waste → Landfill → Unclassified → Unclassified → Landfill Leachate → Leachate And Groundwater Microbial Communities From A Municipal Landfill And Adjacent Aquifer In Southern Ontario, Canada

Source Dataset Sampling Location
Location NameCanada: Waterloo, Ontario
CoordinatesLat. (o)43.442Long. (o)-80.577Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F072352Metagenome / Metatranscriptome121Y
F088943Metagenome / Metatranscriptome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0265295_11468523F072352GGGGGMSSKTGGLFSNLRRAPTAVHLPCCKNGCGEMLALDDGWQCPVCNWYRGYYRGERHP
Ga0265295_11468524F088943AGGGGGMSGLSQSVIANEDHLVAIYRRTGDTSFTHKEIADLIPCGRMLRYTVPGIFIPARDSKGVPLKGGSRARSNVWRWHPRAAELCRQAIERDHRWENLANGLTGGSECV

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