NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0265295_1039549

Scaffold Ga0265295_1039549


Overview

Basic Information
Taxon OID3300028601 Open in IMG/M
Scaffold IDGa0265295_1039549 Open in IMG/M
Source Dataset NameLeachate microbial communities from a municipal landfill in Southern Ontario, Canada - Methane capture system biofilm
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3130
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (90.91%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → Smithella → unclassified Smithella → Smithella sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Solid Waste → Landfill → Unclassified → Unclassified → Landfill Leachate → Leachate And Groundwater Microbial Communities From A Municipal Landfill And Adjacent Aquifer In Southern Ontario, Canada

Source Dataset Sampling Location
Location NameCanada: Waterloo, Ontario
CoordinatesLat. (o)43.442Long. (o)-80.577Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F058179Metagenome / Metatranscriptome135Y
F072820Metagenome / Metatranscriptome121Y

Sequences

Protein IDFamilyRBSSequence
Ga0265295_10395491F072820GGAGGMKPLHQVIEDAVTIRGIIDYLEKSVEPVSLHELAMTQHISNATALRLCRILEKASVIEHPTVTRIVMGASQEVPQLAWQLTKSFWLG
Ga0265295_10395495F058179GGAMKISERAAGICDMTAENIALALWLAFIAACIMAFYLLADAATLSMTGSCAGQGFSNITIEADILMASINQTANGTSWQIWGAPV

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