Scaffold Ga0265295_1039549

Overview

Basic Information

• Taxon OID: 3300028601
• Scaffold ID: Ga0265295_1039549
• Source Dataset Name: Leachate microbial communities from a municipal landfill in Southern Ontario, Canada - Methane capture system biofilm
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3130
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (90.91%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → Smithella → unclassified Smithella → Smithella sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Solid Waste → Landfill → Unclassified → Unclassified → Landfill Leachate → Leachate And Groundwater Microbial Communities From A Municipal Landfill And Adjacent Aquifer In Southern Ontario, Canada

Source Dataset Sampling Location

• Location Name: Canada: Waterloo, Ontario
• Coordinates
  • Lat. (^o): 43.442
  • Long. (^o): -80.577

Associated Families

Family	Category	Number of Sequences	3D Structure?
F058179	Metagenome / Metatranscriptome	135	Y
F072820	Metagenome / Metatranscriptome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0265295_10395491	F072820	GGAGG	MKPLHQVIEDAVTIRGIIDYLEKSVEPVSLHELAMTQHISNATALRLCRILEKASVIEHPTVTRIVMGASQEVPQLAWQLTKSFWLG
Ga0265295_10395495	F058179	GGA	MKISERAAGICDMTAENIALALWLAFIAACIMAFYLLADAATLSMTGSCAGQGFSNITIEADILMASINQTANGTSWQIWGAPV