NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0265309_10181538

Scaffold Ga0265309_10181538


Overview

Basic Information
Taxon OID3300028599 Open in IMG/M
Scaffold IDGa0265309_10181538 Open in IMG/M
Source Dataset NameMarine sediment microbial communities from subtidal zone of North Sea - Hel_20160524 (Illumina Assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1308
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Subtidal Zone → Sediment → Sediment → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameAtlantic Ocean: North Sea, Helgoland
CoordinatesLat. (o)54.1817Long. (o)7.9018Alt. (m)Depth (m)8
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F071009Metagenome122N
F090089Metagenome108N

Sequences

Protein IDFamilyRBSSequence
Ga0265309_101815383F090089N/AMSVTYYLTDHNGNQIAFFYRVDNERYNTVPSILWACRQYPQCQGSASSKGDFIEQAKQTLKEIKKLSVPVRSSKKCTDCDISLQGMENESNVCDECNPITE
Ga0265309_101815384F071009N/AMTTDPENLPSLDDESLQALITHYTGLKYKLTDNLRVRERLVELQDEQLKRQIESLGNYEPIGDDLKNQLNNQXPKENI

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