Scaffold Ga0247611_10238050

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0247611_10238050

Scaffold Ga0247611_10238050

Overview

Basic Information
Taxon OID	3300028591 Open in IMG/M
Scaffold ID	Ga0247611_10238050 Open in IMG/M
Source Dataset Name	Sheep rumen microbial communities from Palmerston North, Manawatu-Wanganui, New Zealand - 1770 DNA GHGhigh gp2
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1944
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Foregut → Rumen → Rumen → Rumen Microbial Communities From Sheep, Dairy Cows And Beef Cattle From Various Locations

Source Dataset Sampling Location
Location Name	New Zealand: Palmerston North, Manawatu-Wanganui
Coordinates	Lat. (^o)	-40.3794	Long. (^o)	175.6106	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F041054	Metagenome / Metatranscriptome	160	Y
F052997	Metagenome / Metatranscriptome	141	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0247611_102380501	F052997	GGAGG	MGYYEDVYLKRLNRYGIDFQSRMQRQREENFKRQLRKSVYYVNFEYEEKMREGELTPMRQNETKIMQYLLTDVHLNMPNGTVLFIPNKDNELQPWLIYYLEELKASGYNRYIVIKMTHFLTWKDRSGNEQTTWAYLYSQEDNMLKDELKSRSRNKVLYTENLKLSFFIIPTNEHIRKDDYLEVGEGALKEAYVVTGYDIQSTPGVEYVSVDPQYIRDLSEPPEKTSEDSDKDFFWLNGGE
Ga0247611_102380502	F041054	GGAGG	MNVRNCEDIGINAQYIIRRLLANQNLLKLLYYTDKDPLSHEDLTPEQIKEEVFGKLVKIVPRIGPKETAHSIIALRIARGRGLAQNSEFKNVIISIETFVPMTQWIIKDTNLRPFAIMGEVQKSLNNKKIEGMGKLTGGDFDLNFLTEEISAYEQTFVLTSYD

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