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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300028591 Open in IMG/M |
| Scaffold ID | Ga0247611_10005262 Open in IMG/M |
| Source Dataset Name | Sheep rumen microbial communities from Palmerston North, Manawatu-Wanganui, New Zealand - 1770 DNA GHGhigh gp2 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 17250 |
| Total Scaffold Genes | 12 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 8 (66.67%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Host-Associated → Mammals → Digestive System → Foregut → Rumen → Rumen → Rumen Microbial Communities From Sheep, Dairy Cows And Beef Cattle From Various Locations |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | New Zealand: Palmerston North, Manawatu-Wanganui | |||||||
| Coordinates | Lat. (o) | -40.3794 | Long. (o) | 175.6106 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F041054 | Metagenome / Metatranscriptome | 160 | Y |
| F052997 | Metagenome / Metatranscriptome | 141 | Y |
| F084920 | Metagenome / Metatranscriptome | 111 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0247611_100052624 | F052997 | GGAGG | MGYYEDVYLKRLNRYGVDFQSRIQGQREENFKRQLMKSVYYVEFEYEGIMREGELTPMRQNETKTMQYLLTDVRLDMPNGTILFIPDKDNELRPWLIYYLEDMKASGYNRYIMLKMTHLLSWIDRNGDEQTSWAYFYGQEDNMLKDELKSRSRSRVLYTENLKLSFFIIPLNEHLRKDDYLEVNAGGELESIKEAYVVTGYDTQSTPGVEFVSVDPQYIRDLTPPPEKTEEDDEDEFFWINGGVTDGS |
| Ga0247611_100052625 | F041054 | GGAGG | MEVRNCADIGINAQYIIKRLLANQNLLKLLYYTDKDPLSHEDLTQEQIKNEIYGKLIKIVPRVGPKETAHSIIALRIARGRGLATNSEFKNVAISLETFVPMTQWVIKDTNLRPFAIMGEIQKSLNNKKIEGLGKLTGGDFDLNFLTEEISAYEQTFSLTSYD |
| Ga0247611_100052628 | F084920 | GAGG | MDNEFGLQELYFVQLKSTYPIEIKGKEIAAGEVIAVFDSIQISNFQEIHKEVAAQGGYQNRKLVIWNRTEGVNLIFTKGIFSKTQFALMNNSRLIEVGNNQMVRIAQRDELETDSEGKITLTHVPIDSWIFVYNKETGEKLTGLSLINEKTLQTSLVYKDVIVDYEYGYDNGASASFIGEDIFEGYVTLEGRTRIKDDITGETHTAIIYIPKLKITSDFNLTLGQNAQPMVGKFSGTALSVEKEKQLRALEIYFLEEDIDKDSEWR |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |