Scaffold Ga0247611_10001257

Overview

Basic Information

• Taxon OID: 3300028591
• Scaffold ID: Ga0247611_10001257
• Source Dataset Name: Sheep rumen microbial communities from Palmerston North, Manawatu-Wanganui, New Zealand - 1770 DNA GHGhigh gp2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 46047
• Total Scaffold Genes: 55
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (23.64%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobrevibacter → unclassified Methanobrevibacter → Methanobrevibacter sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Mammals → Digestive System → Foregut → Rumen → Rumen → Rumen Microbial Communities From Sheep, Dairy Cows And Beef Cattle From Various Locations

Source Dataset Sampling Location

• Location Name: New Zealand: Palmerston North, Manawatu-Wanganui
• Coordinates
  • Lat. (^o): -40.3794
  • Long. (^o): 175.6106

Associated Families

Family	Category	Number of Sequences	3D Structure?
F051210	Metagenome / Metatranscriptome	144	Y
F071326	Metagenome / Metatranscriptome	122	Y
F072445	Metagenome / Metatranscriptome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0247611_1000125719	F072445	N/A	MATVAELVRRDDGYMKFIDYTSTYRDNNKEFLRGDMWQFDFITWPKIVYSPGNTIFHARLNSVQVGIDSSVSGFEKRMRGNYVIRQQTGQNTSGTLTLSFVDREDQAISYFVDDWKQKIADRDTKYSFRKDDVVADCKLVLTNSSRLAVRSLNFYNCIIQDAALDESGVDADGTDRSDIQLSMAFEHYDRNFDNL
Ga0247611_1000125722	F071326	N/A	MDNTENMASRNLDKANKLYEIGLKNIKLQMKLLGTEFVVLRPKDNSKWKNVFGGSYSSESTLENDYEQFTTTLIVNMNEMKDVWNRNRDMLESYTPDGSLQVGDELQYTRGKRTYRFKISMKQGYSEAAEGLFTYTLSSIIETLDE
Ga0247611_1000125739	F051210	N/A	MNKYEQYMQSDKMMDALMNSSVSYEDARIRANEYAKMFSRNEEDFGLNSGNGETLLEKRFSGYAETPLLSTQYFNASVASYVSSFAGFMSIERDFDQPNGLFYWFDVLGVTDMRSVIPNLGPDNYQDINSMGNFEVDIPASATNYFSVVAGRKIIPGTVRVKISDPDNMVANHRKVELIDDGQGYLMAKAGILNDGTINYLNGRIEFTLSFNMAATSIAGTPSIKIVGKEDVTGTPCNTNGANTTHNNDKRFVAKMQQLGLQTVPDMLVAEYNIAALGAMKKATGADMASFLFTKLRELYTKMINYKLVSTLDEGYSGNTMADLNLAQLDTQLNAPTDNPLRFTDYRSRVDLFDAYLINVETELAKKAVKGVTTTAYVADTKAASQFQKGGIIGKFKKNEKMTYISDLLGWYDGVPVLRSMDLDSGANNEATFYAIHKTPDGQMAPLARGIYMPLTDTPTIGNYNNPTQMASGIYYQEGVKYLAPELVQKVTFKIGL