Scaffold Ga0247611_10000131

Overview

Basic Information

• Taxon OID: 3300028591
• Scaffold ID: Ga0247611_10000131
• Source Dataset Name: Sheep rumen microbial communities from Palmerston North, Manawatu-Wanganui, New Zealand - 1770 DNA GHGhigh gp2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 152578
• Total Scaffold Genes: 278
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 192 (69.06%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Mammals → Digestive System → Foregut → Rumen → Rumen → Rumen Microbial Communities From Sheep, Dairy Cows And Beef Cattle From Various Locations

Source Dataset Sampling Location

• Location Name: New Zealand: Palmerston North, Manawatu-Wanganui
• Coordinates
  • Lat. (^o): -40.3794
  • Long. (^o): 175.6106

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012184	Metagenome / Metatranscriptome	282	Y
F076729	Metagenome / Metatranscriptome	117	Y
F086398	Metagenome / Metatranscriptome	110	Y
F087968	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0247611_10000131133	F076729	N/A	MNLTDSDTLKFLKGTPVLFEDICAVYPVTLGEIVDEGYDRFE
Ga0247611_1000013186	F012184	AGGAG	MNTNEILNTILAIPGAQMARANKTNFVVIPTDEGFAKVAVGAALAKDTKNHKAFNAEAAIAEYKAYEAEKALREAEKANKPVKVKGPNPEAQARRDELDAVIGAMPSFTDCTATDIMNAIEGKVAFTLTPMNVGQSAKRLVEKGVLVVGTKDGDKKSYYTKA
Ga0247611_1000013192	F086398	AGGAG	MKEQMTYHVAVQRANRVQHIIDEIGIGQIIKEKYTRFSLEQAGRWVCLTDTGITIVKDEPKEKIITMYVTTQKELVAVFGGASKIPAFLRKKVDRNQSKYTERGKTIWK
Ga0247611_1000013193	F087968	AGGCGG	MVKITKALARKMYDNGEEIMIIPNRIKPNSPLASWISKPSEPMFMDTFDKVCDAVFYYNCSPETGMNLAYYAKEV