NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247828_10933687

Scaffold Ga0247828_10933687


Overview

Basic Information
Taxon OID3300028587 Open in IMG/M
Scaffold IDGa0247828_10933687 Open in IMG/M
Source Dataset NameSoil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)562
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil → Soil Microbial Communities From Agricultural Site In Penn Yan, New York, United States

Source Dataset Sampling Location
Location NameUSA: New York
CoordinatesLat. (o)42.673Long. (o)-77.032Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F030801Metagenome / Metatranscriptome184Y
F037803Metagenome / Metatranscriptome167Y

Sequences

Protein IDFamilyRBSSequence
Ga0247828_109336871F037803N/AELRLRGAVKVADILHILEPGFASLIPYEIQRMKETGLVIYDEPLGLESVLRLP
Ga0247828_109336872F030801GGAGGMPDISAGIRNAVGEKIVEIQRLADQLEDILYQAGLAQRRGRHKDSRCEDIKNICRDIADEVTPT

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