NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247840_10002952

Scaffold Ga0247840_10002952


Overview

Basic Information
Taxon OID3300028581 Open in IMG/M
Scaffold IDGa0247840_10002952 Open in IMG/M
Source Dataset NameFreshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2015_17m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyRestricted
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).


Scaffold Components
Scaffold Length (bps)29428
Total Scaffold Genes30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (36.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location
Location NameSpain: Castile-La Mancha
CoordinatesLat. (o)39.9879Long. (o)-1.8737Alt. (m)Depth (m)17
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010014Metagenome309Y
F018866Metagenome232Y
F028091Metagenome / Metatranscriptome192Y
F046855Metagenome / Metatranscriptome150Y

Sequences

Protein IDFamilyRBSSequence
Ga0247840_1000295212F046855N/AMSLPAALSGQALSAITAISPLENFLQIFNTNPYFIGLMMLILNLGGRFISLEVTKKQEQFLQLPWVRRVLIFTVLFVATRNIWVAFWATVTVVLFLGYLFNENSALCIFGDGGRSGSKCSDAPKPGEEMTPEEKEILQRLSSKAQRYQTGGSGDKSTSKNPQQQALENSVGPPADEEDDVLHTDIYAANLTLLRNPQ
Ga0247840_1000295213F028091N/AMRSWPSFLSFQGSTDGIFRAISVLLAGVIIVKYSTLFEEGYAQKLTDLYIHPWWRILVVFLALTSALWCPRVGILIALVVFFYLSDMNTLITPFSEL
Ga0247840_1000295219F010014AGTAGGMAQPVFPDKHTISAYDAFPMPQFMTRTRREVDTIDAINARQFEHWQTDGKYGVMNRPDINKQAPFYDMLPNDSRGSDKSYRSQPRFDVDASRGVQNPYFDKYDTTFDARNMTRELRASVYEDKHTGYLKESEKLLQRNFDSRWLNPNVVAQQAQAAEQLRPKMDDIRLFYNNKPSADTSNKLNFNC
Ga0247840_1000295221F018866N/AMDSQRHNKTHKKPFNDIENPVGEADNNFKNLLEDSAREAYCRPWHRIERGLRLNRLRIFIEEVGPQFTMTKDEKDAFFIFLQKALDKKLLNTLKVVNYDQEIQRITIIRGLEIKRNQEGILKWGFSTKKPRADGTRKKKKDDIPSVSTHGEESTETKIEDEVNQIINN
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