Scaffold Ga0247840_10000597

Overview

Basic Information

• Taxon OID: 3300028581
• Scaffold ID: Ga0247840_10000597
• Source Dataset Name: Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2015_17m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Restricted
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).

Scaffold Components

• Scaffold Length (bps): 74089
• Total Scaffold Genes: 81
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (27.16%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location

• Location Name: Spain: Castile-La Mancha
• Coordinates
  • Lat. (^o): 39.9879
  • Long. (^o): -1.8737
  • Depth (m): 17

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007255	Metagenome / Metatranscriptome	354	Y
F009453	Metagenome / Metatranscriptome	317	Y
F014361	Metagenome / Metatranscriptome	263	Y
F015306	Metagenome	255	Y
F037077	Metagenome	168	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0247840_1000059719	F015306	N/A	MFSLLYIPINYGLKARSPILYRLKVKMMSKSVHSTTPHFEKQKIARFRRLDNDHISAIESLFKQFPFLNDRVEIHMPFNRAKPTFSTGTVWVWPKFDKRPVGYLIFIDGFAPCIWYPERQEGMTFRWLLPPNFCQKGATVCLANILAGESVLQIEDIIVSEGKDLWSNNVFSERWHTLRDFWNSLPADQPLLAFKPRIVKPIPLSQWHLHYDPSIYWIIQADHSKQCRWYWKDTVTIPEHKAVEFIAPVLKRSAEILNILVAYCTPYAKTVLPDTYSLYSQEGVSLGVASISTLNLSLEIRKVISDNPKGIPVEVKWNDSFNKYQVVRIMPDETPITTASFFYHKNL
Ga0247840_1000059731	F009453	N/A	MASAGTLLSDLDGKAPVFSNKDDDLVNKILADMNIPSQSNPIMMNNSAPPPASNGRMINSPNPNTTYPMAVDPGTATAHLIGKDYPTAADFANVMHAPQFSHGGSQFAQYAPQAAPQQPTLIETTKGNMYSDIISQIKQPLLVAIIVFIVSLPVINVLIGHYLPSLLRIGGDLTTAGLIVKALVGGFLFWFIQKVLVPLMVV
Ga0247840_1000059746	F014361	N/A	MSALSAFCTQLLNFFEELCNTFPEERDIKMATEAIKGAKKINPRLILDLFTEHVYNDLAPAVLKRDILHIRHVAQQKLSTQFNEMISALAIFDKHWDSMGTANQEIIWQYLKVLCILSEKARADKMLI
Ga0247840_1000059765	F007255	GGA	MTPTWFPWIFVGGLVFIALSFTAAKYKDKDYKKMNLLQDFISGSILIAFTGVLVPDMFPKMEMPVSLPSSFSGGFDNGDLDLQVGPPRLAGR
Ga0247840_1000059766	F037077	N/A	MPTTIYDSSLITQRRRATTESGSFINRISPWNTPPAGTSTNQPNTGYAPALGIWDQSIINTVKNGQMKFYRKGDGGCTTVSNGCPCVPLTVAEQSCCGTN