Basic Information | |
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Taxon OID | 3300028581 Open in IMG/M |
Scaffold ID | Ga0247840_10000597 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2015_17m |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Restricted |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).
Scaffold Components | |
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Scaffold Length (bps) | 74089 |
Total Scaffold Genes | 81 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 22 (27.16%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (20.00%) |
Associated Families | 5 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations |
Source Dataset Sampling Location | ||||||||
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Location Name | Spain: Castile-La Mancha | |||||||
Coordinates | Lat. (o) | 39.9879 | Long. (o) | -1.8737 | Alt. (m) | Depth (m) | 17 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F007255 | Metagenome / Metatranscriptome | 354 | Y |
F009453 | Metagenome / Metatranscriptome | 317 | Y |
F014361 | Metagenome / Metatranscriptome | 263 | Y |
F015306 | Metagenome | 255 | Y |
F037077 | Metagenome | 168 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0247840_1000059719 | F015306 | N/A | MFSLLYIPINYGLKARSPILYRLKVKMMSKSVHSTTPHFEKQKIARFRRLDNDHISAIESLFKQFPFLNDRVEIHMPFNRAKPTFSTGTVWVWPKFDKRPVGYLIFIDGFAPCIWYPERQEGMTFRWLLPPNFCQKGATVCLANILAGESVLQIEDIIVSEGKDLWSNNVFSERWHTLRDFWNSLPADQPLLAFKPRIVKPIPLSQWHLHYDPSIYWIIQADHSKQCRWYWKDTVTIPEHKAVEFIAPVLKRSAEILNILVAYCTPYAKTVLPDTYSLYSQEGVSLGVASISTLNLSLEIRKVISDNPKGIPVEVKWNDSFNKYQVVRIMPDETPITTASFFYHKNL |
Ga0247840_1000059731 | F009453 | N/A | MASAGTLLSDLDGKAPVFSNKDDDLVNKILADMNIPSQSNPIMMNNSAPPPASNGRMINSPNPNTTYPMAVDPGTATAHLIGKDYPTAADFANVMHAPQFSHGGSQFAQYAPQAAPQQPTLIETTKGNMYSDIISQIKQPLLVAIIVFIVSLPVINVLIGHYLPSLLRIGGDLTTAGLIVKALVGGFLFWFIQKVLVPLMVV |
Ga0247840_1000059746 | F014361 | N/A | MSALSAFCTQLLNFFEELCNTFPEERDIKMATEAIKGAKKINPRLILDLFTEHVYNDLAPAVLKRDILHIRHVAQQKLSTQFNEMISALAIFDKHWDSMGTANQEIIWQYLKVLCILSEKARADKMLI |
Ga0247840_1000059765 | F007255 | GGA | MTPTWFPWIFVGGLVFIALSFTAAKYKDKDYKKMNLLQDFISGSILIAFTGVLVPDMFPKMEMPVSLPSSFSGGFDNGDLDLQVGPPRLAGR |
Ga0247840_1000059766 | F037077 | N/A | MPTTIYDSSLITQRRRATTESGSFINRISPWNTPPAGTSTNQPNTGYAPALGIWDQSIINTVKNGQMKFYRKGDGGCTTVSNGCPCVPLTVAEQSCCGTN |
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