Scaffold Ga0272482_10038463

Overview

Basic Information

• Taxon OID: 3300028578
• Scaffold ID: Ga0272482_10038463
• Source Dataset Name: Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT160D0
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1244
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil → Soil Microbial Communities From Uranium-Contaminated Sites Across The Upper Colorado River Basin Region

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 42.9888
  • Long. (^o): -108.3994
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001183	Metagenome / Metatranscriptome	755	Y
F059706	Metagenome	133	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272482_100384633	F059706	AGAAGG	MLKHMRMQIRMQIPIQGTRAASVWGAARSIGLKPEEGEFDALLKELLRGGYIEPYPSSSLAAHGLYRLTDSGISAADEADSPTPLR
Ga0272482_100384634	F001183	AGGAG	LSEEQQRQRVRELVRKKTGLDWPELQVGDIEKAMSSVTLFYWGTKEEVGKRWHQKQLELTDEEAESIGV