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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300028571 Open in IMG/M |
| Scaffold ID | Ga0247844_1053128 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch201714.5m_1 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Restricted |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 2299 |
| Total Scaffold Genes | 6 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (83.33%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Spain: Castile-La Mancha | |||||||
| Coordinates | Lat. (o) | 39.9879 | Long. (o) | -1.8737 | Alt. (m) | Depth (m) | 14 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F010302 | Metagenome / Metatranscriptome | 305 | N |
| F017131 | Metagenome | 242 | Y |
| F048773 | Metagenome / Metatranscriptome | 147 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0247844_10531282 | F017131 | AGGAGG | MAFPGTYNFNYYRGDRYEFVIRPKTANGGAFDLTGYSADFFVANARGENKTQYEMQAIVDSSADTVTCTILPGSGEDLVAGTYVYDVQIDSGATLVYTLLTGSITVTEDVSGADDS |
| Ga0247844_10531283 | F010302 | AGCAG | MVDVLLNTDDVVVIGPPESIDLLVDIGPQGVRGSKFIVGSGEPNALTASGVLFGNTLILNDMYINTAPGENYGYMYQYISQAGANTWVQVLKVSPAIYSSVETIAFTSGAGSITIPISNIVTVSGSPLTASNFNVQFRIEGANPIASAMEIPALAGAGTNLVINFDAVQYSSGSWSNLTGSKTVHLFISIV |
| Ga0247844_10531285 | F048773 | AGG | MPTTFDSDGKAAYVYNAADDTWYQVSGKTDISGTFEWTGLHTHLSNFTTSEASVAKKGTNNFLNPAARDAAIPSPTAGTICLIRQNSGGSTINEIQVYIGGSWTTVLPSPVGQTEKYLKSDGTISIWEQSPDAMTQVILMMGA |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |