Scaffold Ga0247843_1046828

Overview

Basic Information

• Taxon OID: 3300028569
• Scaffold ID: Ga0247843_1046828
• Source Dataset Name: Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2017_8m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Restricted
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).

Scaffold Components

• Scaffold Length (bps): 2497
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → Candidatus Falkowbacteria → Candidatus Falkowbacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location

• Location Name: Spain: Castile-La Mancha
• Coordinates
  • Lat. (^o): 39.9879
  • Long. (^o): -1.8737
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027829	Metagenome	193	N
F041161	Metagenome / Metatranscriptome	160	N
F083616	Metagenome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0247843_10468284	F083616	N/A	MFLQLHDGPDLPYGLRPFPYPKRSGPIMPVSYAEDPFAPGSPVMQTTPYRLLSGCDQAQVYADFVPQNANGWKVRLDQVSQSQKLVKDYQTLRAAKGTGSAPIYSADGTITGFKQSSKAEEVAAYIQLGLKALQLAQAGVRSGEASRLKDDAQKLYNENKWGIADVCNQTLVMLQNNAQNCYDSLNWWIKDQGTPGKSAGQKRIANRSVVIRQNALVILVKEIEAKGGSFTPGGKGTPVGIAAILALVAGAAFLRF
Ga0247843_10468285	F041161	N/A	LPIYIDIRRREPPFYIDIYRPTFAFRRKKQLLVGCFLLMCYLYGVRTSKTAYKSLRHTIEMMSRQIADSIEFANDFLPKRTTCQEIWYILKDNLIYRNDPPGIELLQSFPSLMEDNYWGIPGAGDCDCFTIAALACAKARNIPARAVIVGNSSQAPTHIYAQLFDGSKFIDFDLVSSSYGTTKAYKNKQIIKLH
Ga0247843_10468286	F027829	N/A	MAFTNRFEADISPKKTRIDPKAMQQTIDIPIGSNPDTGKTYSFRVYLAVSKMQKKLNYAPTILITITFFKYKLHLQSRDVKALVSAFNKLSSFIDTASPNLENKLSQELLTYDQWEKEYFERKNMGIININREEYKK