Scaffold Ga0247843_1012640

Overview

Basic Information

• Taxon OID: 3300028569
• Scaffold ID: Ga0247843_1012640
• Source Dataset Name: Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2017_8m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Restricted
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).

Scaffold Components

• Scaffold Length (bps): 8327
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (40.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfurellales → unclassified Desulfurellales → Desulfurellales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location

• Location Name: Spain: Castile-La Mancha
• Coordinates
  • Lat. (^o): 39.9879
  • Long. (^o): -1.8737
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028149	Metagenome / Metatranscriptome	192	N
F078232	Metagenome / Metatranscriptome	116	N
F097235	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0247843_10126402	F078232	AGGAGG	MPALTSAQIAALSGCFDCLSPGVKETYMVTLLQQIQAASPGAVLTTTSTGGLLTATATSAANPARRRFVIQNQKGEHLHVKFGTGATTTDYHYVLQSAATTGISGSSLTFDGYTGAISVAPVTGSPSYTFAEFV
Ga0247843_10126403	F097235	AGGA	MYGQMMGKRKMDGMGRMGAEVEVVEFTPPKELRLEGESGTAMVDWRTTPRGTIEIIGFDGITLGESGRQDVEEVEGAEMEMDDMEEEA
Ga0247843_10126404	F028149	AGGAG	MASGNVISCKQFASFLVSQEPVYDKEVLKDIRPFDGMIGYYNTGSFDAYSGTTHRFDRFNSVFPNVTGAWENPTGAACTGQPCDPTENKIGWGWSRNEYSLEKQSWGSDILCFDQIMTKTKAKEHFRQIIDDVLRPATNWITTYYLQRKAAELAGSLVGGNSFACATGLPAINFSWVGAGYTTLRVTDNAAVAITAASLGRLTPEILQSRVTRQYFLGAIQAGKEGYDSLQLHTDKDTFRYLSKTNASLYDAWRFGVFAPAAKEFYKYGFMGFAGDFMVKVLQFPLRFNATGTAGNYTLVLPYKNVAATEGIKSVFNEDYDRAQYQISYINNPRALRVMPFRPEAVNPNMPFMVRDYGGRWKFATNDLGADCAGKPIDNSRGNKGKFIADFQLAVKPEHPEWLEAIFHKVDRGCIEIIPVCEADPGNPAQSYNSADPVCGVVVQFTAVANDAGNFVIGTTGIMCDDNIVTNAGISEATPAALVAALQTIWDAEFGSASGTWSVVSGNVIQLAGSAIGTTTEVVPCTNVTLEFAI