Scaffold Ga0247843_1008782

Overview

Basic Information

• Taxon OID: 3300028569
• Scaffold ID: Ga0247843_1008782
• Source Dataset Name: Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2017_8m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Restricted
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).

Scaffold Components

• Scaffold Length (bps): 11582
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (10.71%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (12.50%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location

• Location Name: Spain: Castile-La Mancha
• Coordinates
  • Lat. (^o): 39.9879
  • Long. (^o): -1.8737
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000710	Metagenome / Metatranscriptome	925	Y
F002259	Metagenome / Metatranscriptome	577	Y
F005775	Metagenome	390	N
F006697	Metagenome / Metatranscriptome	366	Y
F008615	Metagenome / Metatranscriptome	330	N
F025444	Metagenome	201	N
F042709	Metagenome / Metatranscriptome	157	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0247843_10087821	F005775	N/A	MAKQRPIYTKAQHQIVTPSFVEKKIQLHKSIKWTTKDDRELFIMVSGSVTRYVPKSEHNSQAPMGFFNLQMGHYNKISIHTRDFAQLAEVFEQITLFLKNNAGKLDQVVTKELDSYQTYHLKNLLNTNEPR
Ga0247843_100878215	F000710	N/A	MASNMNISYRQGIRNKGFQVTVPTTGATQTLSLSGLAKAFEGILLSSTTSAAPATLVNALQLRVTLTINNDVVIDDVVAHELGASVASGITTGFPAFIPFPRALTGQDTILLRVTNSSGVSQLLNATVYYKNEI
Ga0247843_100878216	F006697	N/A	MANQVQKVAYVDSKLGVSLPGQQTTRVIYDSVNAVAGQQFFQFFTNFAGKNEFQTNLTTNKLDSAESMVIKSVQIIMNSATSNIADHLNLNITVGNQVVLKDFDPSFNATSRGLSFDRLHSGFTSSTNLEVRLLTEIVIPPQVNFKAELQLSNALIAVDDDVTIIFKGYGRIFSAGNSF
Ga0247843_100878217	F002259	N/A	MGMSAQDKMLNVASRLGLTSLKDMQGTTRMVYDSNATASVNHTFFKGAAQRAFPLSNVGANGNQFQVNEALLVEKIGFFIPGAADGISYFGLTTGQASVKFDLVIGNKTVIKDATVELGGEQAFYNDGTIASSVIDLEGVGILIPPQVEYYVIAKSFLAADRIASSTRLGCYLFGTGALLNFNTTI
Ga0247843_100878219	F042709	GAGG	MNPLVLVGAVALFFLLRKKPPVVDNTTPDVVPFTASNVNAYKNLNTTSTFDNRLAKEARRVTPDGTGKNIVDGSYKCFAPGNQSRRAAIIKVYEDLDRLQTQINNSTGERREEYRKDRREKDDERAILVAEHYMICEAFFEELKKKGATPQQTTITTAQQTRSAL
Ga0247843_100878220	F025444	N/A	MYLQLAGPSPLDTAENPLAPGAPTYKYKDFYLGQGQDIILPDALFPANVEGYAKALKDLEGLYNKYAKGIKKKITDKGMGAISFAVIMGTLQAIGAGFQALSTVARSAQINIARQRITELYNNNTFNVQNLNRLTPTQLSNAMTQIDEQINMTPRTQFGRQMALARFRLVYQQRFDQVAGGGGIGNLPGWVLPAALGLGAFLLLRGRK
Ga0247843_100878222	F005775	N/A	MKKQRPIYTKAQHQIVTPAYVEKKIQMHKNIKWTTKDGRDLFLMASASVTRYVAKSEHNDQAPMGFYNMQMGHYNKISIHTRDFRQLADVLLQAHLFLLNNADKLDQVVTKELDTYTTYHLKNLLDTNEQP
Ga0247843_10087823	F008615	N/A	MNAPDTFGAKMFGRFIKKGWHISFTDSYQDRVCVIPPERLDAQHVFGIYIPVMRHTWQPDLKREWWAALQTKDCMLGPKFEATAHPDDTERFAAFAAWIGDLLRNPEKFT