Scaffold Ga0247843_1004623

Overview

Basic Information

• Taxon OID: 3300028569
• Scaffold ID: Ga0247843_1004623
• Source Dataset Name: Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2017_8m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Restricted
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).

Scaffold Components

• Scaffold Length (bps): 20267
• Total Scaffold Genes: 31
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (29.03%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location

• Location Name: Spain: Castile-La Mancha
• Coordinates
  • Lat. (^o): 39.9879
  • Long. (^o): -1.8737
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001215	Metagenome	746	Y
F018919	Metagenome / Metatranscriptome	232	Y
F025981	Metagenome	199	Y
F045546	Metagenome	152	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0247843_100462313	F025981	N/A	MLTDRITAALPFKELLTIFRSIDTSLQVLANTKSGNLTTAFISKKAIAERLGVNPINIDKLIHQGITSKGKSGLVEGRHYCKLSKDENNTSNFLYDSAKVLTDAWSSFQNYD
Ga0247843_100462324	F045546	AGGCGG	VSRKKGSDNFSFRGHGGLDAVKSISTIAGSDNTNQLANPLSFERRFRPATGTKNFSVLSDYNYASLWVRWRRGYELSMYTQGAYSGLVYSSFKYYISGTAGVGGYIPGIFFVYPTVRADTRMHIVGIRPRDTFNFLDFGISVQSVTQFDATTYAVILSQRFGSPISFFTGEVLSNRFNSNGTEKLVGYNNYTVIAVGLNGVKTTPTINPDFDTLFLSFSEQESWSVINSTTLSVPAIGPPAVGEFLSTEIRMQCTCQDFLNREGFNFYNSSLNQRYPYAKVMNIDPGTYDAGPDAATRVSNSNDYPGYARTFGFIYLDQLYTAPTYVDVASYSDPSLYYFQPKWCKHIFASFWDMQRKFNLSNVTSSWLPQPTDEPMNEYYREKFEVDLTKQMSFLKRSHDFNWWQRYSPSLSGLPKQLLYSDKYNMIAKTLNFGQLDDVTELQDTNFELFTIDQFNPLDPANLPQDTYDGGTYLNGIATSTTTLDLDGGQYNNGSLLPPASPPSYINGGTY
Ga0247843_100462325	F001215	GGA	VFKGIASTSTNKQPCLIDRPFLRGARINNGTTTVNPTNPAFSDLVQLVRVGDLPTEDAALVEDVFLVSNEGYPNTGGVRSCELAFYIYAPNQAAPSTSTALMLQKVEVGLSGATEGSIQRIELPAINAPVPSVGDTSLLRPIEVGKGEGLYLEKGYILCVGLIGNGPSAISGGLSPSGITVFAQGGFY
Ga0247843_100462330	F018919	AGGAGG	MTTNANQISVSKIYPGNYTNVLRYWHEEKTFQFRNANDTETTYSNQPVGGPVGVVFTPGWIAQQAIGYVDLSYQALGTTSQLEYYTQAYSSGLNGANVAFTNANVIIPSPDAYKDVRADITDGIKVPSGAYVYRLALRVDGGDVISSGVGGGVATPTLGLGPAVGVGLNTTPSASGFFVTLAGSSSRIANGSYNTNNVFNTNNLFRNGAETQYKVFAVANLGGAAASGLAQASGVFDPRASNNQLRGKNKALGICEICWFLSDEAANRDDLALQPAGIIESNVFTSTVPS