NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247843_1004575

Scaffold Ga0247843_1004575


Overview

Basic Information
Taxon OID3300028569 Open in IMG/M
Scaffold IDGa0247843_1004575 Open in IMG/M
Source Dataset NameFreshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2017_8m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyRestricted
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).


Scaffold Components
Scaffold Length (bps)20437
Total Scaffold Genes39 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)36 (92.31%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location
Location NameSpain: Castile-La Mancha
CoordinatesLat. (o)39.9879Long. (o)-1.8737Alt. (m)Depth (m)8
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004788Metagenome / Metatranscriptome423Y
F006890Metagenome362Y
F008614Metagenome / Metatranscriptome330Y
F036200Metagenome170Y
F042218Metagenome158Y

Sequences

Protein IDFamilyRBSSequence
Ga0247843_100457512F006890GGAGMTPAQKEIYLVIDEWWKRHGFGPSVDDVMLMTGETGRGNVHRKMLKLVELGLCKGLRNRPRSIRPANLRVRDIV
Ga0247843_100457516F004788AGGMDVFSILIKQADEKIEQLKDYLAEGKAETFEEYKKLCGEVRGLLIMRGYTLDLKQRMENSDD
Ga0247843_100457523F008614AGGAGMSMQYDVKSAHTETTGTLVSQRTRLKAYHCISGGTAGDVIFRDGGSGGTLLLQFNIGTGTQPINMLIPGEGILFQTNIHVTLPATAKVTVFYG
Ga0247843_10045755F036200AGGMLLEWQDLWDAMNANPDEWIPTTEHMYWEMLEVLPPEKMLGHSFLVGEASHDNGHGEAVYSCFIKFGDTYKAKNLTVAEFMREHGHIPARELR
Ga0247843_10045759F042218AGGMTPSIKTLKTIFGENAARAKEILLMTRAQLESTPTGAARVAECYHPPETCDIRMECLNALGEFHGVEGFETKAGVCLYLNAGDAYALTLVRFKGAYRVKCWGDIAEKYTD
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