NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247843_1004341

Scaffold Ga0247843_1004341


Overview

Basic Information
Taxon OID3300028569 Open in IMG/M
Scaffold IDGa0247843_1004341 Open in IMG/M
Source Dataset NameFreshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2017_8m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyRestricted
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).


Scaffold Components
Scaffold Length (bps)21424
Total Scaffold Genes38 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)26 (68.42%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Associated Families7

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location
Location NameSpain: Castile-La Mancha
CoordinatesLat. (o)39.9879Long. (o)-1.8737Alt. (m)Depth (m)8
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009887Metagenome311Y
F020143Metagenome225N
F024787Metagenome204N
F026555Metagenome197N
F027846Metagenome / Metatranscriptome193N
F033425Metagenome / Metatranscriptome177Y
F045093Metagenome153N

Sequences

Protein IDFamilyRBSSequence
Ga0247843_10043411F045093N/AMNHPLIPFRHRNFGWVHCGHHVRLVTIQGGLNMEMQNAKQLKIVASGKPKKKLGRHTTAMVKAITGRNDIDTVKREMLLGLARAWDRIEESGKGGHTIPSISKELREIWDSCALPDEDDLFE
Ga0247843_100434113F020143AGGCGGMQPLYARLPGRTRSLAAVPSIYVENLDELMATMKKIEPDLHKEFRRELTKAVKPVAKLAQDFVPHSPFPGWRDVEPSYPPAWGWANDQAHRGRTYGENKRSRWKWSQTEVVRGIRVSAAKTKVQRVKGTTFSVTALAVINKSVPGIIYELAGFGTSKSRSKTRRISRNPNASESFIGKLQGTAKAQEYKEKRLIYRASEQLGGQVNDNLYGVLKKYLGEKFRG
Ga0247843_100434131F027846AGGLELVKYDKQSGAYVDEKRKHFVKASLIRKHAKKAIGARQIKGRLSAKMVEAYWLDKFKEAVKYEL
Ga0247843_100434132F024787AGGAMNSEIYGWLITIILFTLVALLIGVTWMVAVENGYDKGFKSGYKRGLADSKQSSVKVEKFTVRTHPSMRQKMLEADNEYLMEKVVNLWDRENR
Ga0247843_100434134F009887N/AMGNMEMIGADGVRATFTDNGVELDIVPLNECCEWCNDPRMLNINGVRKCAGCGCVNHIEYKKS
Ga0247843_100434135F026555GAGMSKFDYHKAMREGHGYNLYVADLLQHFGVPKVDVPAFSIATTHDQIRDKTLNEKDVIVDDLVLEIKSSSRSFTNADDFPFNPVMIDTVSGFDSKIIKPFAYVMISQITQGIFVIPTSTKYDWTIRTYFDADREIEERFYMVKKRHCRPFIEMVDVLLERANERTNQMQ
Ga0247843_100434138F033425GAGGMAITTKQVAVTATSQSIISVDNVQRDVLLHAKHEVYIGNSGVTSSNGYLMDNGDEVRLSLTEGEDLWCVSAAGTGTLHVLVSKVD
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