Scaffold Ga0247843_1004096

Overview

Basic Information

• Taxon OID: 3300028569
• Scaffold ID: Ga0247843_1004096
• Source Dataset Name: Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2017_8m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Restricted
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).

Scaffold Components

• Scaffold Length (bps): 22344
• Total Scaffold Genes: 33
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (15.15%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location

• Location Name: Spain: Castile-La Mancha
• Coordinates
  • Lat. (^o): 39.9879
  • Long. (^o): -1.8737
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001883	Metagenome / Metatranscriptome	622	Y
F004366	Metagenome / Metatranscriptome	441	Y
F023327	Metagenome / Metatranscriptome	210	N
F033725	Metagenome / Metatranscriptome	176	Y
F061680	Metagenome / Metatranscriptome	131	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0247843_100409616	F033725	N/A	MITILNREIPNQLEELTIEQFEAISDINNDTNLDSIDKHLQVFAYLGIPESEFWDYDVANFVDVVKQFNSSEHKDYPTVEEIELEGYVYKAQMKLTVRDTKLIEKITIKKEKGYISEMLAVMFKREDLTSTEHYTDAHIKHKAKLIRKLNASISIPYIMFIAQKISQQANDQATAELEPSQS
Ga0247843_100409618	F001883	N/A	MGRYANTGEFNILYPTRRKMATILKRIVDSELAGGEGTLVNSIRINAKITGFQKLEIQIVAAYYFIFLNNGAYLWNNGVITPRDFVAQFTDELNSRGITAEIYQQYTEWLTKKYPLVGAVEVLERQQKIVYTFEALYAPPGFEQGFPLDV
Ga0247843_100409621	F004366	N/A	MNSLQAITNHIELFYTNHLQVMKVGSDFKEQLYNFATQNEKYPIVFVVPVSVNPTENTSEFNFDIYCFDIIQKDRANIITILSDTQQILNDLYIYYMDSQDYAFDVVGVPSFQALNNDLLDYAAGYVMNITLTVNDWTDCAVPLN
Ga0247843_100409626	F023327	N/A	MCAVVEDYIYLLKGVHVRIDRQAVASDGRQMAMLMNAYQIAMNGNKEHSNI
Ga0247843_10040963	F061680	N/A	MQVTITFRHAFFDFDEVLGSCEFNITNITDEDYEVEITNVLATQIVGEVELDYILTDVELNELRQEIIWCIQETTLIEDMQHPEDDLDEEDWR