Basic Information | |
---|---|
Taxon OID | 3300028569 Open in IMG/M |
Scaffold ID | Ga0247843_1003114 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2017_8m |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Restricted |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).
Scaffold Components | |
---|---|
Scaffold Length (bps) | 28089 |
Total Scaffold Genes | 60 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 15 (25.00%) |
Novel Protein Genes | 12 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (25.00%) |
Associated Families | 12 |
Taxonomy | |
---|---|
Not Available | (Source: ) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Spain: Castile-La Mancha | |||||||
Coordinates | Lat. (o) | 39.9879 | Long. (o) | -1.8737 | Alt. (m) | Depth (m) | 8 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F002455 | Metagenome / Metatranscriptome | 557 | Y |
F004723 | Metagenome / Metatranscriptome | 426 | Y |
F012446 | Metagenome / Metatranscriptome | 280 | N |
F015582 | Metagenome / Metatranscriptome | 253 | Y |
F016966 | Metagenome / Metatranscriptome | 243 | Y |
F027823 | Metagenome / Metatranscriptome | 193 | Y |
F029411 | Metagenome / Metatranscriptome | 188 | Y |
F038644 | Metagenome / Metatranscriptome | 165 | Y |
F040100 | Metagenome / Metatranscriptome | 162 | N |
F040616 | Metagenome / Metatranscriptome | 161 | N |
F041760 | Metagenome / Metatranscriptome | 159 | Y |
F100474 | Metagenome / Metatranscriptome | 102 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0247843_100311410 | F015582 | N/A | MNSNNIDPELQAEQLEDAKYLTELNHYVNTLAPPSAESVALYSAKLSNLEDIHTEIRAKYPEFMPIYDTSTDSVCNQDLGKYQEMTYSINQRDMRRE |
Ga0247843_100311418 | F041760 | N/A | MTKLLAVRYPSSVDRVRQSFDHLRQVFDVPDVSTIKDMFGSLLFNDSDLYRYNYCLVKYNNELFIIEPVDLSKCTYVRKKIQFHPLQHMI |
Ga0247843_10031142 | F029411 | N/A | MNADSYVIDPQNEMSDLYAPDYREVALNEDRYLEMAYEDRFEMPCMEDYQ |
Ga0247843_100311421 | F040100 | GAG | MIDLTSLFKTITESVPNYLMFITLILMCYGMCVSFVKIVCDNVVKVVLANRVPVTFKIKDGEITENN |
Ga0247843_100311424 | F016966 | N/A | MNKVTFTRVKNQSLPNLYSGTINGEIVGFIYKPNDTKSDRNAWRSYVGVGDKAKFLYHTWDMNDAMEAVQLAVK |
Ga0247843_100311438 | F038644 | N/A | MSSIKITQLPNGPWREYALEAERRGLEKISDCRLSGTDVILIGAIDMIRELNEKLESKKDKDVV |
Ga0247843_100311439 | F027823 | N/A | MNVTAAINVPNVDQSSIWKGYYEAHFMSGKEIDAKYPILNKVWKYSHHKLRVGYDGYYYAYEKDIGTGIMIDPWFREFKVNMPIADDDVYNYIADDIYKSKMYHTTVESNAVLLVVYKK |
Ga0247843_100311443 | F002455 | N/A | MPDYESMAAYLLDEGILCVTSAIDRYDHRACISLHININDYFVPASDAEVVTYDELPKLYDLYKERKYDGVTQFVADKRGIPNIYWRDEGSDFNKRVKEKS |
Ga0247843_100311453 | F004723 | N/A | MKEGDKFIHTDILGKKWELTYTGTRREVKGCEFEFFIDDKGRCCFFTDSEVSKMEKKD |
Ga0247843_100311454 | F100474 | AGAAG | MTDTEYIKKLEEALYDSLALNINWVSTALKSDLEFHSEYAAVIKQAKEALKLSKKKKD |
Ga0247843_10031146 | F040616 | N/A | MIDPEDIAYEDSVSSDTAGWPGDGSGEDDFQDYNQNEAGDYSNE |
Ga0247843_10031148 | F012446 | AGTAG | MKKLQKEFTGNYDKVGMNKFVQIRNENGVAMYQRFNTDGTPRSYEVFIIKTIPKGAPLPNGKVVEESYQAYPGSAQFGKTAFDCRDIGQAEERFDQLVIKAKDSADAKEEAAKTGVRNRGRRGSGTKIKLDMTLKPGTKFTAKFLMSMLGVTQPVLFPIIKQWEKEGSIKVNGSVKGEGKGRPATEYIVV |
⦗Top⦘ |