NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247843_1003114

Scaffold Ga0247843_1003114


Overview

Basic Information
Taxon OID3300028569 Open in IMG/M
Scaffold IDGa0247843_1003114 Open in IMG/M
Source Dataset NameFreshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2017_8m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyRestricted
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).


Scaffold Components
Scaffold Length (bps)28089
Total Scaffold Genes60 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (25.00%)
Novel Protein Genes12 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (25.00%)
Associated Families12

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location
Location NameSpain: Castile-La Mancha
CoordinatesLat. (o)39.9879Long. (o)-1.8737Alt. (m)Depth (m)8
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002455Metagenome / Metatranscriptome557Y
F004723Metagenome / Metatranscriptome426Y
F012446Metagenome / Metatranscriptome280N
F015582Metagenome / Metatranscriptome253Y
F016966Metagenome / Metatranscriptome243Y
F027823Metagenome / Metatranscriptome193Y
F029411Metagenome / Metatranscriptome188Y
F038644Metagenome / Metatranscriptome165Y
F040100Metagenome / Metatranscriptome162N
F040616Metagenome / Metatranscriptome161N
F041760Metagenome / Metatranscriptome159Y
F100474Metagenome / Metatranscriptome102N

Sequences

Protein IDFamilyRBSSequence
Ga0247843_100311410F015582N/AMNSNNIDPELQAEQLEDAKYLTELNHYVNTLAPPSAESVALYSAKLSNLEDIHTEIRAKYPEFMPIYDTSTDSVCNQDLGKYQEMTYSINQRDMRRE
Ga0247843_100311418F041760N/AMTKLLAVRYPSSVDRVRQSFDHLRQVFDVPDVSTIKDMFGSLLFNDSDLYRYNYCLVKYNNELFIIEPVDLSKCTYVRKKIQFHPLQHMI
Ga0247843_10031142F029411N/AMNADSYVIDPQNEMSDLYAPDYREVALNEDRYLEMAYEDRFEMPCMEDYQ
Ga0247843_100311421F040100GAGMIDLTSLFKTITESVPNYLMFITLILMCYGMCVSFVKIVCDNVVKVVLANRVPVTFKIKDGEITENN
Ga0247843_100311424F016966N/AMNKVTFTRVKNQSLPNLYSGTINGEIVGFIYKPNDTKSDRNAWRSYVGVGDKAKFLYHTWDMNDAMEAVQLAVK
Ga0247843_100311438F038644N/AMSSIKITQLPNGPWREYALEAERRGLEKISDCRLSGTDVILIGAIDMIRELNEKLESKKDKDVV
Ga0247843_100311439F027823N/AMNVTAAINVPNVDQSSIWKGYYEAHFMSGKEIDAKYPILNKVWKYSHHKLRVGYDGYYYAYEKDIGTGIMIDPWFREFKVNMPIADDDVYNYIADDIYKSKMYHTTVESNAVLLVVYKK
Ga0247843_100311443F002455N/AMPDYESMAAYLLDEGILCVTSAIDRYDHRACISLHININDYFVPASDAEVVTYDELPKLYDLYKERKYDGVTQFVADKRGIPNIYWRDEGSDFNKRVKEKS
Ga0247843_100311453F004723N/AMKEGDKFIHTDILGKKWELTYTGTRREVKGCEFEFFIDDKGRCCFFTDSEVSKMEKKD
Ga0247843_100311454F100474AGAAGMTDTEYIKKLEEALYDSLALNINWVSTALKSDLEFHSEYAAVIKQAKEALKLSKKKKD
Ga0247843_10031146F040616N/AMIDPEDIAYEDSVSSDTAGWPGDGSGEDDFQDYNQNEAGDYSNE
Ga0247843_10031148F012446AGTAGMKKLQKEFTGNYDKVGMNKFVQIRNENGVAMYQRFNTDGTPRSYEVFIIKTIPKGAPLPNGKVVEESYQAYPGSAQFGKTAFDCRDIGQAEERFDQLVIKAKDSADAKEEAAKTGVRNRGRRGSGTKIKLDMTLKPGTKFTAKFLMSMLGVTQPVLFPIIKQWEKEGSIKVNGSVKGEGKGRPATEYIVV
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