Scaffold Ga0247843_1000506

Overview

Basic Information

• Taxon OID: 3300028569
• Scaffold ID: Ga0247843_1000506
• Source Dataset Name: Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2017_8m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Restricted
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).

Scaffold Components

• Scaffold Length (bps): 92165
• Total Scaffold Genes: 139
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 31 (22.30%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 9

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location

• Location Name: Spain: Castile-La Mancha
• Coordinates
  • Lat. (^o): 39.9879
  • Long. (^o): -1.8737
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006260	Metagenome / Metatranscriptome	377	Y
F007798	Metagenome / Metatranscriptome	344	Y
F019824	Metagenome / Metatranscriptome	227	Y
F020882	Metagenome / Metatranscriptome	221	Y
F021983	Metagenome / Metatranscriptome	216	Y
F023346	Metagenome / Metatranscriptome	210	Y
F026831	Metagenome	196	N
F048260	Metagenome / Metatranscriptome	148	Y
F091907	Metagenome / Metatranscriptome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0247843_1000506102	F023346	N/A	MKTEIDTVSKNIILTYARKIRNVQKEQIDPYIGLIENELITLFPELKDRDDNALNWAYDILNAESNTEVVETLNRVEKIITEERKEKWNCNYCGKNTYNDDVEYLFGTNHIGCALEEDIKNREHSDPDYILDARLRKITEIESKLNYYESELDKLHFELKRMRSDYPHEPTN
Ga0247843_1000506107	F091907	N/A	MNKNKTGRKATAVNEITDRNFTIVDLININANVKAPTIRMHVKRSVTAGRYKISGSQKTGKRGKPSIVYTYDATPTVATTPTVESTQTSAN
Ga0247843_1000506110	F007798	N/A	MKDTTLKQLVRDRKGQPRGMVVATVIDGTIRFGWSHTNTKAGDRFDKCKALTIALGRAENGWGPKTNVPISTAKILNKMVDRSVRYYKNVPIYVI
Ga0247843_1000506111	F019824	N/A	MDKYITDNFTGSIDDLLNHCSNLDTAKVEEQVKAEEKEACIQVIMKELECDEAEAEVIYNEIALAEVKETVDKMVAEGLLYVSGHNEDGEPLFQLTELGKSVRKELGDGK
Ga0247843_100050612	F048260	N/A	MYTRTNARNKTNFVGHNSTGVEIYLSTPVAKAKKASRLTLRAGKTRVDLNGRQIKALRDVLNAGYTA
Ga0247843_100050648	F026831	N/A	MKKFITILLTALNLYANDLYLYDKNNDVELTEVINNKLNVLPTIIGKTYTLTNSLNINTTNSSVSYIVPYRIALLQKENTSTYFNQTSTEYVNDFKLPEVVKVKDAMFNFTVNGELYCVSESTNLNTLLTTLCSVTFGQSTFFIKSNEKFTHVYVMSGNVTVLDNKSKKKKELKSGDYLVVTPQIVMSAREASVTKLGNSFSVKEVEDEEKEVHSKESTTLKSKLDNTLFVNYGQNIFGFKLK
Ga0247843_100050666	F020882	N/A	MTKLKELGDLGDRMMQGLPFAQGGAVSGASDVSTFASPDVSQDPNHFGTLTDKSNITAGAKDSMEKISPFGPYTGQNPRDYVGDVEKIKYKVTPDEVIMGIDYEMKKLVLKDKQVAKQNVVNNLKKDPQYYSKLHMLDITDEPEKIDETDYRTPQEKAIAEIMRNLHEAKKQRRNWN
Ga0247843_100050670	F021983	N/A	MNEWPTLPMGNLQAMMVMRQQSAPVSSISSFDPYQAMLRRKQSNVSDDNGYINAEVEQYDSKDIEALEEFCQQYGIMGFNFGKMNPKSALRMLKNKMGIVEKVNNKKMLLD
Ga0247843_100050698	F006260	N/A	METELTIKDKAIPPIIIQHDDLKFDGKTITIPGYYIDTILDYIKYWKLDGEKQVDVEDYVAFRNFLYDIQEYKNQGN