Scaffold Ga0247843_1000457

Overview

Basic Information

• Taxon OID: 3300028569
• Scaffold ID: Ga0247843_1000457
• Source Dataset Name: Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2017_8m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Restricted
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).

Scaffold Components

• Scaffold Length (bps): 96779
• Total Scaffold Genes: 107
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (20.56%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 7

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location

• Location Name: Spain: Castile-La Mancha
• Coordinates
  • Lat. (^o): 39.9879
  • Long. (^o): -1.8737
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001732	Metagenome / Metatranscriptome	644	Y
F021517	Metagenome / Metatranscriptome	218	Y
F022186	Metagenome	215	Y
F028808	Metagenome / Metatranscriptome	190	N
F029414	Metagenome / Metatranscriptome	188	Y
F041771	Metagenome	159	N
F093866	Metagenome / Metatranscriptome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0247843_100045717	F029414	N/A	MILLKDLLIESPSVITVYRGVNPAYGDVGLGINSTKIGDKLVATLGPNHTDNLDVAKRFGKQIITTKLNGPGLELSHYNDIVNLYKQYENMLPPGLAKQIKYSSGQEQLELIQLAGKELRSILSKKYGYIKSPLAVSDANYLSQKGLTGDLYIPLR
Ga0247843_100045720	F093866	N/A	MNELSKIDMANLVFSNDKKAKIKDVLCSKYGATDVQYRDLTYGICIDVVGTDSFRFVKNAILKTLDVHEETLSVLGESKRSMKASYVYLPEKDKVLNKRLKKLKTA
Ga0247843_100045737	F028808	N/A	MKRYSLLYESSIYDYLVWEPTGKLQYIADELDKIPTDSTKLYRGMSEKEYNILKSTGKVTSKGRGNTRNIVGSYLASDFKLAARFALVNYRDKGEGIIVVIDKSKLPDLKNVDPGNYVTSYIPIEAVTKIIDLKQL
Ga0247843_100045756	F041771	N/A	MKIDVLKEFIKKTVQQEVRSVVQAELKLQLAEIFSKEVLQAKKKSSDSDLEQQILKELETMNESVVEEPIKPVKKFVKYTSNPMLNDILNQTTGGIPQEGGMVNMMGGFGGATQTTINETKVPENAPAPVKSVYSAMNRDYRSLMKAVDSKKSKV
Ga0247843_100045775	F022186	N/A	MILLTRIIEDLTKPQVKEAVDPSLLKLIDEVINDTNVLVVNNLKMVKDILSKEPIDKAKLDVALSNYKRYFNRDNGGTPEVIRGMTMQNKLDELSK
Ga0247843_100045788	F021517	N/A	MKLKHLLENSTEVAYSSLTKEEKSKMVGAIKSYNEYRKGLKADCVYETAQKIMEAVNLAERYAIKECGDWMQAKMVERDMKEIKRDASKMYEEAQKMKEIEKQLEMLYEQVGMRLERYFEIADSMNEAPQSQTSNVTINPSAQNQ
Ga0247843_100045798	F001732	N/A	MNYKKQLYYTIVILILTGCISSEVKPAKQVTTSQDAVAKQEAKVDNTMVELEKVEKGKRVQTSSLSIGIQHSLSQVTNAPVQVDTAKALNERVISIVGSPHIDEIKRIKATVDLLNSQVAEERKKGDQLLSQRDEIINKLQKEKSALKEKYDDELWQMTDKAKEIAKEADQSKATLDAMSGMFGLNAVFWGLKKFFISALTAIIVFVIVFVILRILATVHPAAGAAFSIFNMIGSGLLSLVKALTPHAFEMSNFASKDKVNEFKSPLVKIVDVIQELKEKQKESPDRVYPLTEVLKRFDKEMDSSEKELIDDILKEQKWIK