Scaffold Ga0247843_1000381

Overview

Basic Information

• Taxon OID: 3300028569
• Scaffold ID: Ga0247843_1000381
• Source Dataset Name: Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2017_8m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Restricted
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).

Scaffold Components

• Scaffold Length (bps): 105876
• Total Scaffold Genes: 138
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 98 (71.01%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location

• Location Name: Spain: Castile-La Mancha
• Coordinates
  • Lat. (^o): 39.9879
  • Long. (^o): -1.8737
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008812	Metagenome / Metatranscriptome	327	Y
F012108	Metagenome / Metatranscriptome	283	Y
F057320	Metagenome / Metatranscriptome	136	Y
F061803	Metagenome / Metatranscriptome	131	Y
F074795	Metagenome	119	Y
F074805	Metagenome / Metatranscriptome	119	Y
F085623	Metagenome / Metatranscriptome	111	Y
F086678	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0247843_100038115	F061803	GGAG	MEIDITKQEAWKLIDAVKAYMKDYTVTGTVHKTFDSISKKLKEVIKGE
Ga0247843_10003812	F085623	GGA	MTLLRTLILEYDLVEIHYNELLKNKPYLVRVFSYNNTDPSELRLDEKEVKNLYQTLKEHDLL
Ga0247843_100038130	F008812	AGGA	MIQWVGILIAVLGLAYNGVKDYQKGDIKLSRLPQKQVLTKPVYPIQYCLMGYDPNIDKVFYLHETGIWHDYAPQQRRYQTTPQPYQNQGSSAVAGSYGTQGTPSHRYGQSPQANTNPIR
Ga0247843_100038131	F086678	GGA	MAKYYIKCGTLEIIYSCNKCPRDAAMDAIWETNENDTLDEHIYLDERGYRDYKNADGHTCVLHTTHILKDAGWSIE
Ga0247843_100038132	F057320	AGGA	MSYVGLYDDAGSKNAFYIIKDKKIGRKRVGFKEFENKQEAEFAHRVQKHLAQFDLAPMVYGDVGMIRRHDGELTAYGYLTEVAKPMPVCHDDENCDGECFQSECSNGTTISELVYDLNEHGLDYNDSHKGNFGYVRRRGSWVPVAIDLGVESFSSWVADIYGEFDYDADDDNYVDSYGVCNCVRCQQFRDRG
Ga0247843_100038137	F012108	GGA	MIKIEMSVRESLNMIANGCSLDMFEKIVCSLEVALGVNQRRMVTITGGMTLDNRIHCIKAIRLHTGWGLKEAKDWSDYLVGGWKYDKWYPAPENTKQSMTLKTPEAAEALLRELTTLGCEGFLS
Ga0247843_100038141	F074795	AGGAG	MTKDEAIIKVLKVLKSAMMVVCKPNKEEALTLAEVHGITVRDLIEVWEKMAMRI
Ga0247843_100038145	F074805	N/A	MDVVIDFQFERVSMNDVILFGSILAAVAAAVVGFVFYSVYGGSKASLANAQEGQVYNFVYEQPLHGTHERFLAKVIGKQTLTADQIARLNRKSRYRINDPEFIRTSNLVTCRTADGKVRNFYAERVTKCRKPLLAGALFKSGFANLF