NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247843_1000158

Scaffold Ga0247843_1000158


Overview

Basic Information
Taxon OID3300028569 Open in IMG/M
Scaffold IDGa0247843_1000158 Open in IMG/M
Source Dataset NameFreshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2017_8m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyRestricted
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).


Scaffold Components
Scaffold Length (bps)157011
Total Scaffold Genes190 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)48 (25.26%)
Novel Protein Genes9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (44.44%)
Associated Families9

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location
Location NameSpain: Castile-La Mancha
CoordinatesLat. (o)39.9879Long. (o)-1.8737Alt. (m)Depth (m)8
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014710Metagenome / Metatranscriptome260Y
F016038Metagenome / Metatranscriptome250Y
F016772Metagenome / Metatranscriptome244Y
F026209Metagenome / Metatranscriptome198Y
F032917Metagenome / Metatranscriptome178Y
F036073Metagenome / Metatranscriptome170Y
F052416Metagenome / Metatranscriptome142Y
F065460Metagenome / Metatranscriptome127Y
F088194Metagenome / Metatranscriptome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0247843_1000158116F065460N/AVSKFNDKIEELNEGFKSILYKKREFYPKNFNLSEEFVKAFKTEYKRLLDEGIEPKKALVRLNKALLFHTAN
Ga0247843_1000158130F016038AGGMPANIDALPTQKSLIDLAELPKNSFNSTFLGFNLKKLLDDVMLVKFVDESTDGAAIIRNGIHIPTNADTRAWRIGEVILAGPNVKHTVIGDFVCFPNNLGMPVANLDVDGYGTLKKGIFLNEQRIFGICSVRQEKDTIAANVLKKKK
Ga0247843_1000158168F032917AGGAMLRKFAIFSLSSLLLCACTTVTPDKVEDEIASYDATTPNGYDVQNSGFIGFTDDGRGLITQFGLLRYNTLIKAYKIRFKSFKGVDLNENAGVTEYTDKRNNKLFIIDQQHLVYYAVLNSWRKDGKEPDSIWDRAKDIVK
Ga0247843_1000158170F016772N/AMKNFLPFILIPLLVAGCVTTGPDNKVDPAQTVENALPYIAPAVTLTCTVVLDQAVSATDRAEKAKMINNVATIVEGLTRGSTPTPDQLQKALTDYLPVEKTHWSKYVVAIKDLYATQFNKVGGNAKLAVDVLNAIAKGCKDATESYVN
Ga0247843_1000158184F014710N/AMMNTTMEYKTIPTAFKKKGFTYTQLKREGARAIFQQTRMGSSLNNYEVVKIGRHNGYTMGGMTIEPAETYPGSSLWGITAWTCTSIDEALKRYETLDS
Ga0247843_1000158187F036073AGGAGMTTEQTTAYETPYDADLHCKKIAWMVKHSPDWDYQNQTLEQYLETVPDYPTDAQVKDFNHLYVEPFVPFKKEKPYQGEDVNEKS
Ga0247843_1000158188F088194N/AMSMINETATTTEETTAYALGTAIGTLINLKRMVEQNMTDYANNLEGVTGLHPMWGKAKLMSEFDRAIDKLNTITYPYKV
Ga0247843_1000158190F026209N/ALVVDVNLTFPYTTSMMNKQVTNEQYDDNTGEWRQVTEPAIGGIKWHKRESLGGEQQSAYYDHSFYKVPFYGPYDQHRIHRALNKLYPARFNKFGGYSTVSAVKQLDDQHIKVELCYHIGD
Ga0247843_100015871F052416GAGMDMVEPKVIVSPISGQPCRPILKTYIRGNKEIVEAEWIDPASGTFIRKGTVSIREITKPEQK
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