 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300028567 Open in IMG/M |
| Scaffold ID | Ga0255342_1049865 Open in IMG/M |
| Source Dataset Name | Wastewater microbial communities from Lulu Island WWTP, Vancouver, Canada - plant14 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Restricted |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 2290 |
| Total Scaffold Genes | 9 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 8 (88.89%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → unclassified Methanomicrobiales → Methanomicrobiales archaeon | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Engineered → Built Environment → Water Treatment Plant → Unclassified → Unclassified → Wastewater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Canada: Vancouver, British Columbia | |||||||
| Coordinates | Lat. (o) | 49.1150727 | Long. (o) | -123.147 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F005744 | Metagenome / Metatranscriptome | 391 | Y |
| F031138 | Metagenome / Metatranscriptome | 183 | Y |
| F034940 | Metagenome / Metatranscriptome | 173 | Y |
| F043951 | Metagenome / Metatranscriptome | 155 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0255342_10498653 | F031138 | AGAAGG | MTKRNNYVGPCATACKPGAGTDTQNGTFDRILVAATEHAAREVGLPGRADRMIACRSCGAPTASSDGICRDCADAMRSERSEALSALCRVHRVRYVDDLPVSVLQEMQAEWGRR |
| Ga0255342_10498656 | F005744 | AGGAG | MDETFEIIKAGVADAPPEQALYRIQQTYPDGSGGRLNIDWKGLLRVHELIHDRIALEGCVCETCSTRGCHRPATWEIECRGVGVASCLIYSCDDHCPDPAILSPQDEIRRIVVEE |
| Ga0255342_10498657 | F034940 | GAGG | MGNNCWYYRAQYAGMTKVCMRQSIVECGRIRRFGLCPIPPDSEAWRRCGFAIGQHEIPLMVEE |
| Ga0255342_10498658 | F043951 | GGTGG | MDPIGLGRPIEASLGPRYRCPVCGLKLWTIQAPWTGWQEWYRTEDGRRHYKHSCNIMRDALVMFRWMFGQDW |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |