Scaffold Ga0255342_1029424

Overview

Basic Information

• Taxon OID: 3300028567
• Scaffold ID: Ga0255342_1029424
• Source Dataset Name: Wastewater microbial communities from Lulu Island WWTP, Vancouver, Canada - plant14
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Restricted
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).

Scaffold Components

• Scaffold Length (bps): 3379
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 1

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Built Environment → Water Treatment Plant → Unclassified → Unclassified → Wastewater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location

• Location Name: Canada: Vancouver, British Columbia
• Coordinates
  • Lat. (^o): 49.1150727
  • Long. (^o): -123.147
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029768	Metagenome / Metatranscriptome	187	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0255342_10294241	F029768	N/A	TDTMTETAVAVNALYSEQELKKDSQVSVRLESGLFEALETQTQVWGFKNISQTVRAILTFYFLPVVYELELKNRSISEHKQFLQEKQEEGFSLEQARANYFTFQVVEYLEFLEQAMVMARHSMKFMESTSDKMNGILKETVNKIEQAMKELEQVAE
Ga0255342_10294246	F029768	GGAGG	MTDTMTETAVAVNALYSEQELKKDSQVSVRLESGLYEALETQTQMWGFKSISQTVRAILTFYFLPVAYELELKNRSISEHKEFLKEKQAEGFSLEQARANYFTFQVMEYLEFLEQAMVMARHSLKFMESTSDKMNGILKETVNKIEQAMKE