Basic Information | |
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Taxon OID | 3300028564 Open in IMG/M |
Scaffold ID | Ga0255344_1024504 Open in IMG/M |
Source Dataset Name | Wastewater microbial communities from Lulu Island WWTP, Vancouver, Canada - plant18 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Restricted |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).
Scaffold Components | |
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Scaffold Length (bps) | 3804 |
Total Scaffold Genes | 6 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (100.00%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Engineered → Built Environment → Water Treatment Plant → Unclassified → Unclassified → Wastewater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations |
Source Dataset Sampling Location | ||||||||
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Location Name | Canada: Vancouver, British Columbia | |||||||
Coordinates | Lat. (o) | 49.1150727 | Long. (o) | -123.147 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F015605 | Metagenome / Metatranscriptome | 253 | N |
F023356 | Metagenome / Metatranscriptome | 210 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0255344_10245041 | F023356 | AGGAG | MSENSLKKAVFESRVSAAEAEVMSTELKKSKAVSVRMEEPLFRAIEAQAKVWNEKPAETIRRVLWFYFLPAALEMQLRGESEKFWKGELTPEAAGEYMVFTLEAVEKLRSSAMFLSREASRLREAMEGKLSEALEEEREGSET |
Ga0255344_10245046 | F015605 | AGGA | MYNNAVLLQTLQQVRFKVIDTLKLMLSDYEVSPESSVRVQPASYEVATGEKVEYPLFRNEAGTFYGSKAYLNTENWNLTLKPLPAGSRGVGAFLQFSVPKNYYGSNYFSVGEAGTRAALKKVENELVQNGVFTNLEEAELSRVDTFKNIEPEEPFSSYFSLFSLLKARKAHQRGYGTTFLVANSSQEFC |
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