Scaffold Ga0265319_1000520

Overview

Basic Information

• Taxon OID: 3300028563
• Scaffold ID: Ga0265319_1000520
• Source Dataset Name: Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-24 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 26394
• Total Scaffold Genes: 30
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere → Rhizosphere Microbial Communities From Carex Aquatilis Grown In University Of Washington, Seatle, Wa, United States

Source Dataset Sampling Location

• Location Name: USA: Seattle, Washington
• Coordinates
  • Lat. (^o): 47.6516
  • Long. (^o): -122.3045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002681	Metagenome / Metatranscriptome	537	Y
F007340	Metagenome / Metatranscriptome	353	Y
F010350	Metagenome / Metatranscriptome	305	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0265319_100052010	F007340	N/A	MTGKVLAGVVAVIGSAALTLGTLIALVQGTILAVSIANLPIRILAVTADVLFGTLLLVGCIYLATHLAVRILGVGNADFPPLPETSDLPDLPKK
Ga0265319_100052013	F002681	AGG	VNVIKPEAKRYRFLGFYLFGLCLYQIGIYRWPGGPPFILDPRAGIPVLLINYFSFDNKAIYPVEWITAAWLVLMTGMILFRGQFLKIYLISELILAAPTAYYIGVLAVRHGGDFAPGFNDLLLTLILFCIFSVTPVGFAAWEIRKTRKKPA
Ga0265319_100052020	F010350	AGGCGG	MMRVPVELRATGPDGNSFEESAHTGVVGPLGAMVRSSRLLAVGSEVVLTNRFSQQTARFRVVFVGEQQQDGLWDIGVESLVPLDDFWGVRFPPRPDQLV