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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300028561 Open in IMG/M |
| Scaffold ID | Ga0255343_1014334 Open in IMG/M |
| Source Dataset Name | Wastewater microbial communities from Lulu Island WWTP, Vancouver, Canada - plant16 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Restricted |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 5515 |
| Total Scaffold Genes | 11 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 11 (100.00%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Thermotogae → unclassified Thermotogae → Thermotogota bacterium ADurb.Bin062 | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Engineered → Built Environment → Water Treatment Plant → Unclassified → Unclassified → Wastewater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Canada: Vancouver, British Columbia | |||||||
| Coordinates | Lat. (o) | 49.1150727 | Long. (o) | -123.147 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F012026 | Metagenome / Metatranscriptome | 284 | Y |
| F061870 | Metagenome / Metatranscriptome | 131 | N |
| F078757 | Metagenome / Metatranscriptome | 116 | N |
| F080087 | Metagenome / Metatranscriptome | 115 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0255343_10143341 | F061870 | GGAGG | MKRRIQKLETLTSWKSLPDASEYIQVWAIDPDQEEAEKWFETRDGARVTDPKTIERLTAYYAEALRRGELNITARFEDDPDT |
| Ga0255343_10143343 | F012026 | AGGAGG | MNLRELQATIANIIGKRADAVDKLNRLMMIEDRFNPENIVTITAYKQAIEELSKELNRLETERAELLAREEAARREYVAALNAYDEIYGRFPNAEKEAGEIRKRYAKITDAAEKARTIVLEKMNALTAVAGGFLPIPPAPAHAWSTYAKDYAFAIERGGD |
| Ga0255343_10143344 | F080087 | GGAG | MQATATVTSASEMEHATAWKTSATEYDVRVPARYREYTCSHRVVAIYRRYGQITDYQYRVSKKELLEIERIVETRIEQTNNKGGHK |
| Ga0255343_10143347 | F078757 | GGAGG | MNRKPKTLPKRMVRPFLESIRDVSLSTAERELIDVLSAVPKRAEAINLFDFGRKIRDEETEIVESAFYAVSKIKNRLPER |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |