Scaffold Ga0265326_10000001

Overview

Basic Information

• Taxon OID: 3300028558
• Scaffold ID: Ga0265326_10000001
• Source Dataset Name: Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-24 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 498445
• Total Scaffold Genes: 770
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 564 (73.25%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 10 (90.91%)
• Associated Families: 11

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere → Rhizosphere Microbial Communities From Carex Aquatilis Grown In University Of Washington, Seatle, Wa, United States

Source Dataset Sampling Location

• Location Name: USA: Seattle, Washington
• Coordinates
  • Lat. (^o): 47.6516
  • Long. (^o): -122.3045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031713	Metagenome	182	Y
F036462	Metagenome / Metatranscriptome	170	Y
F038776	Metagenome / Metatranscriptome	165	Y
F042607	Metagenome	158	Y
F065185	Metagenome	128	Y
F069394	Metagenome	124	Y
F071164	Metagenome	122	Y
F074102	Metagenome	120	Y
F091043	Metagenome	108	Y
F094469	Metagenome	106	Y
F096147	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0265326_10000001376	F031713	GGAG	MSNKNVTIDLKARKDKDGMIFYVGKIKAPVLIDCSMGAVFLVFVSDQGDEQLQIALMDNKDLDD
Ga0265326_10000001380	F074102	AGGA	MKKQKTIVPFEFKDMTHQQMVDHLNESLPISLKHNEDLVNRVFARYPVLDKSEVGIIIKAVFASFRDMLILGKIMNFNSLFFDAKLHFFDHRRDGRILPSLKVRISTPPKLRKHDK
Ga0265326_10000001396	F091043	N/A	MDVFHKNITSFFDELLNDLHCQRDTKAYIVSIYGKYKSAEFDLSQDSVTLLFAQARNKQDFLTYQNLGDWIFFANTLAPNHLHHASKEYYDTVARLSYYSCYKLINREWKLFEELADDFLSLEEQVRKRLPQLKTQTSEGIYIGPFD
Ga0265326_10000001415	F096147	GAG	VPDHSKVDMMQWAINKFVSVQMSVEALKQNFVPKYLATGERKFYRFLLLYALNKLIYIEKGSFKGTSPELEFLDYHEQFIILYRREGEDVYLELARCFRRAAHKVYRVMLKKKMTERNAKFLNLV
Ga0265326_10000001427	F042607	GAGG	MIRVVDNKKVEMTDDEYEMYNKIVKSYTDITGKGEDLFIDLFESNDDGIIIFLKPPSKRRTSLEVFLFLMAVMQHQHLRLMHQQIDEAVADIKKNNMAAK
Ga0265326_10000001428	F036462	AGGAG	MSQTVRLGDVLGSNLEENFKDFDLTEIQEVLEQLRDIDAIDLAHAEMLQQQSLRGADIIVGYLSKIVKTVGYLESQVNSTKNKVSLEYVAPDGARTTVDMKKWAGESSPEVEKVQIKLAEAKGAKIVLERKYEILVKSHHHFKDIAAGLRKTILGYSSGTSNAGEGYE
Ga0265326_10000001440	F038776	GGAG	MPKFSIDYSGLTKLTKKAYRLADVKDQLETVAFDVVRFKDSDKGADLWQIQSADDGDYIVALYDNEEVEKTASSNPWGVFVTKNGCDLQISYKGDPLVRLASAKLGIPSSELHKAEQYLPEKLAANKKLVKALLSELSEAARQEVSRRYPELV
Ga0265326_10000001443	F071164	GAGG	MRIAELLNAMASWLSSPNNEAMLLAESDEKCMQVVAESCVLAAELLKKAAVEVDTLEAPTESVITSDSIEETAALANAFDQSGDPQLKRIASVLDELLLTIAAPPNAYAERKDLVDARADALKKKYEQPREDLHKYNQIGKSEKAIEQSGFTKEYKILEAPLSSRYCPDHPGAQIARVGEHMWQCDLDKKTYNFETGFELANGSKVPGGDVSQQTNGLDTPFHAIFDTREGRLGYNK
Ga0265326_10000001445	F094469	GGAG	MNKNALKKILEHPDKDEIIAKLVLDYPAKDIHDWLAGKYTNVSEAKFVVAEKSIKVFKENYLDVYSMIREDMIKTKQAVATSTEDQLELAVKSNPTYKSKMLELAGKEIDVRSMVAQLCLAIETRLGQVFDEIQEDPRNINTKIDRVLIEYGELLGGLLEKYYKFTENPADLVVQHNVTLQVVDQHISVFHDVIRDVLSQLDLESSMLFMELFQEKMARLKPPALEQPLNTDMKLAEAKLLNETINKKLNNS
Ga0265326_10000001459	F069394	AGG	MIKKSYSVQMSYDVSDSEKQQAEKALLYFKAAERFLMQSSDHLNIMKTPFKDNPDMTPEDVMKARAVIRRFRDKAIDNFDQFKKVAFDCVNLMQTFESDTQTLKLMKSFIAAIDDLEVSVNQFSELFNDLHSKDFVKNVVTFIESIQKQCDEIDEIIDERIKSHIQTNILASSWVDSVSNDLQMKIEKKTPLIVDLYNQRQEQLNDAVEERMPSGK
Ga0265326_10000001556	F065185	AGGAG	MKITFDDKSYIECIKSANPGKIIFTISAKDHTDPLKKITNAVEITVEEFKKLISDVT