Scaffold Ga0137415

Basic Information
Taxon OID	3300028536 Open in IMG/M
Scaffold ID	Ga0137415_10132790 Open in IMG/M
Source Dataset Name	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	2332
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

2332

Total Scaffold Genes

6 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → Acidobacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	39.7291	Long. (^o)	-123.6419	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California

Coordinates

Lat. (^o)

39.7291

Long. (^o)

-123.6419

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000781	Metagenome / Metatranscriptome	895	Y
F007488	Metagenome / Metatranscriptome	350	Y
F018787	Metagenome / Metatranscriptome	233	Y
F020633	Metagenome / Metatranscriptome	223	Y
F084509	Metagenome	112	Y
F106044	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0137415_101327901	F018787	GGAGG	MGRGAQGQTQSLTDQQLNQTNALNQQLLGQQQSVGNLLTPQFQSILNNPGFSAADKAAI
Ga0137415_101327902	F007488	N/A	MKIRAYEESDLEALRAIHGRQGFGYAFPDLGNPLFLTKLVLGREEGGKGIAGAALLRLTAEAYLLLDPDAGSPREKWESLLALHETTRRDALARGLEDVHAWLPPAIAKKFGKRLTRLGWVRDDEWTPYCKRLT
Ga0137415_101327903	F106044	AGGAG	MPNLTSNATWDFNPGDTVTLNAAFTFDLQDPNDNQTVSAVLTALQGRTPHVTLTQTDNATISVVVTI
Ga0137415_101327904	F000781	AGGA	MLTVAQLAPMKDRDPYLYETLVKIVSAVNATSANAGVDPAVTRPGLFYFAESDVTPAFSAPRVYFLGASRNLYVQLGNQTLYWRAYSQYVGSLASGPVTFGSPATAVAGGGTSGPAPLPSSGSGALPNGLLRGGNGFGVVPGARVVKQTVL
Ga0137415_101327905	F084509	GAGG	MPSYGNVLPPVSVGFGDSASVIASTDVIFPAPFKSAQVALAPAFSTGKVRAAVEIVWSAAPGVISVQLQTADTDIDAAYVQEGAAITNVNTGNVTRAEFSDVVAKFARILIATLPNNVTATAKISA
Ga0137415_101327906	F020633	N/A	LALTSFVDSENAATAQQPLGMSSPGLKDLELPINVLGERVAFQVGTNQAGAWFKVQRFAPSVRVDPWAPVRGVN

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0137415_10132790

Overview

Ecosystem & Geography

Associated Families

Sequences