Scaffold Ga0137415_10104888

Overview

Basic Information

• Taxon OID: 3300028536
• Scaffold ID: Ga0137415_10104888
• Source Dataset Name: Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2678
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 39.7291
  • Long. (^o): -123.6419

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005634	Metagenome / Metatranscriptome	394	Y
F017498	Metagenome / Metatranscriptome	240	Y
F025100	Metagenome / Metatranscriptome	203	N
F029859	Metagenome / Metatranscriptome	187	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0137415_101048881	F029859	AGGAG	MLTRVVTGQYCSVHQLLFVSSLQAWLSVSPAHIAHTYGDAMRVVEAPCPRCLALTQSALHRQFPALYAPSSRGS
Ga0137415_101048882	F017498	GGAG	MPINHVDEIAYEPAAPPGGIRLQANPPVCNRCWYEITPQNVGQASVVGSAHSSSRFAFIACTACTTVRAREPEQTLLRGQHQR
Ga0137415_101048883	F005634	GGAGG	MRPYDVAKAMGGGLLGTLLQTIMVYGVAPLIVGPSMAGVAITEHACTPSLLVHLLSGSVIFPLGYVWLSSRAFSGPPVLQGMLWAGLLWFVAEVIIAPMLRVEVFSTALGGVPAALRALLGYLVYGATLGSFAGAVQPEDRYASHAL
Ga0137415_101048884	F025100	AGGAGG	MSTVYSEKQLDHYLEIMDRVAELWLQKFPERAAYSPGYWHLFMGLYKNRKQAITKGEAAEFLNAAQIKSPATRAKVIAGAIKLGYVSEQKSQVDKRANLVKMTPKLERKMQEYLSESLQAMSEALKSINKG