Scaffold Ga0137415

Basic Information
Taxon OID	3300028536 Open in IMG/M
Scaffold ID	Ga0137415_10060226 Open in IMG/M
Source Dataset Name	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	3663
Total Scaffold Genes	13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (69.23%)
Novel Protein Genes	9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	7 (77.78%)
Associated Families	1

Scaffold Components

Scaffold Length (bps)

3663

Total Scaffold Genes

13 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

9 (69.23%)

Novel Protein Genes

9 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

7 (77.78%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	39.7291	Long. (^o)	-123.6419	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California

Coordinates

Lat. (^o)

39.7291

Long. (^o)

-123.6419

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F004381	Metagenome / Metatranscriptome	440	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0137415_1006022610	F004381	GAG	VPVTETCLVPAVVNVQESVELPDPVTLVGDTLHDAVVLVARLTTPAKPLTAATEIVEVPAAPAFTLTLVGLAAIVKSWTT
Ga0137415_1006022612	F004381	GAG	VLVPVTPTWTVDAAAKVQDNVALPEPVTLVGETEHDVLLVVKLTTPAKPLTALTVMADVPAVLALTVTVVGLAAIVKSWTWKVTVTE
Ga0137415_1006022613	F004381	GAG	LVPVVVKVHDKVALPEPVTLVGDTLHDAVVLVARLTTPAKPFRPVTVILEVPAALTLTFTLVGLAAIVKSCTTNVTVTE
Ga0137415_100602264	F004381	N/A	VQDSVELPDPVTLVGATAHEVLLVVRLTTPAKPFSPVIVIVEVPAEPASTVTLVGLAAIVKSWTTNVTVTE
Ga0137415_100602265	F004381	GAG	VPVTPTWTVDAAANVQDRVALPEPVTLVGATEHEVLLVVRLTTAANPLRADTVMVDVPADPALTVTLVGLAAIVKSWTTYVTVTE
Ga0137415_100602266	F004381	N/A	VDAAAKVHDRVALPEPVTLVGATEHEVLFVVRLTTPANPLTAATVMLDVPAAFAFTVTDVGLAEMVKSWTTKVTVTE
Ga0137415_100602267	F004381	GGA	LLPVVLNVHDRVALPEPVTLVGETAHDAVVFVARATTPAKPFRPVTVIVEVPAAFTLTLTLVGLAAIVKSWTTYVTVTE
Ga0137415_100602268	F004381	GAG	VPVTPMWTVETAAKVHDNVALPEPVTLVGATEHDVLLVVRLTTPAKLFTPVIVIVDVPALPAFTVTVVGDAAIVKSWTTYVTVAE
Ga0137415_100602269	F004381	GAG	VPVTPTWTVEAAAKVHDNVALPEPVTLVGATEQEVLFVVRLTTPAKPFTAVTVIVEVPAVPALTVTLVGLAAMVKSWTTKVTVTE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0137415_10060226

Overview

Ecosystem & Geography

Associated Families

Sequences