NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0137415_10018742

Scaffold Ga0137415_10018742


Overview

Basic Information
Taxon OID3300028536 Open in IMG/M
Scaffold IDGa0137415_10018742 Open in IMG/M
Source Dataset NameVadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6865
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (70.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)39.7291Long. (o)-123.6419Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004003Metagenome457Y
F004349Metagenome / Metatranscriptome442Y
F006952Metagenome361Y

Sequences

Protein IDFamilyRBSSequence
Ga0137415_100187423F006952GGAGGVIGPLGSANREIREADRRDQQRRQAQLAEPRRLTDHLLCQLEELNLDGVGTVPEGYEPALAELREQLEGLARVRPRLIERLQPGTRTAELIDVVFIIQEIIAPPRLPSGSVAFDDTDV
Ga0137415_100187424F004349AGGAVKAHAWLVLPISALVVAGCSNSAGGPAKPPTAQEILAKPDTANVKDGHFTLVAHIVSGSVTFDATGDGIIVVKPQQASRFAMQTTIAGQPLKFEEIIIGGKEYDLSPDNPRWTVKPSTNSSNPSSFKGTDAIYVGEETLPQGKAWHVKAKDDSGNPFEAWVRESDGYPLKYASTMQGSTFTATFDRFNTGQTVSAPPASDIQQ
Ga0137415_100187425F004003GGAVVARLIRIAVATAAVSLLAACGGPGGPLGPPSAKDILAKPLHANLTDAHFLVSGKFVSTSPGGVPVDVHGDGALVYKSPGAGRFKFETTVAGQKVSFQDISISGSDYTFVVPGNGKWMKTASSGLGPDSFTGASDFKYVGEENLSTGKTWHAKAKDKDGNQFDGWIRESDGYPIKYEITQLGNALTLSFDKYNTGESITAPPASQVVQG
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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