Scaffold Ga0137415

Basic Information
Taxon OID	3300028536 Open in IMG/M
Scaffold ID	Ga0137415_10018526 Open in IMG/M
Source Dataset Name	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	6909
Total Scaffold Genes	10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (80.00%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

6909

Total Scaffold Genes

10 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

8 (80.00%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	39.7291	Long. (^o)	-123.6419	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

USA: California

Coordinates

Lat. (^o)

39.7291

Long. (^o)

-123.6419

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004003	Metagenome	457	Y
F004186	Metagenome	449	Y
F004349	Metagenome / Metatranscriptome	442	Y
F006952	Metagenome	361	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0137415_100185266	F006952	GGAG	VIGPLGTANHEIREAERRDKERRRARLTEPRRLTDRLLGQLEELNLDGVPIVPGSYDPGLAEIRSHLVGWPGIGARLLQRLHSGTRTAELIETVFTIQEVIAPSALPAGAVILEEPDLD
Ga0137415_100185267	F004349	AGGA	VKTKPRATLAAAVLLLAACGPVANQAAKPPTASEILNKPDQANVKDAHFTLVAHIVSSGVAFDATGDGVIVVKPAQASKFTMTTSVAGQSLKFEEIIIGGKEYDLAPDNPRWTVKASTSSNPSSFKGTDAVYLGEDTLTQGKAWHVKAKDASGSPFEAWVRERDGYPLKYASTTQGSTFTATFDQFNTGQTVTAPPPSDVQS
Ga0137415_100185268	F004003	GGA	MTTVLRFAAAVGAASLLAACGGPGTPLGPPSPQDILAKPVHTSSLKDGHFLVTGKFTNNGSTVGLNGDGALLYKSPGAGRFKFQTTVAGQLVSFEDISVNGTDYTLTVPGNGKWLAKASTSGLGPNSFTGVSAFKYVGEEGLPSGKAWHASASDKDGNPFDAWIRESDGYPLKYVITQQGNSLTLTFDKYNTGVAIAPPPASQVVKG
Ga0137415_100185269	F004186	AGGTGG	MQLRRAVLLVVAAVLMAGCGIPTPAAPPSAKEVLAKPQQSNLTDAHFAVTGKITNNGVTVDLVGDGALVYKPKPAGRFKFTTTVGGQTLTIEEVSLDGTNYGLTPASNKWVATKSASGIDPNAFSGASDQKYVGEETLAQGKVWHASAKDKDGNAFDAYIRESDGYPIKYVETQTGGQNITLAFDKYNTGEVIKAPPADQIQTG

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0137415_10018526

Overview

Ecosystem & Geography

Associated Families

Sequences