Scaffold Ga0137415_10009687

Overview

Basic Information

• Taxon OID: 3300028536
• Scaffold ID: Ga0137415_10009687
• Source Dataset Name: Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9556
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 39.7291
  • Long. (^o): -123.6419

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001571	Metagenome / Metatranscriptome	669	Y
F034511	Metagenome	174	Y
F052525	Metagenome	142	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0137415_1000968711	F034511	GGA	LSTGVKRRRKPAQKGVQAVFTPSSNWRGRAQLALGLAAIGAGTAAWTYTTRALGGFGPGNLIPYDASVSAIFLPISIPLLIGGVGLCTYYLAMRRTWWASNRIESALYELEALVSQKNGASGSSLEPRTVADAKVARKPRFGLVPKALTVALVEGVLLVLIYGGLVQEYASNVNMQNWVQANFVPGSYFLNYNAVLVLAGLLGVLIFQLLPRKLQAEKLQP
Ga0137415_1000968712	F001571	AGGA	MVSDKEYPKEYAVLLTDRRSIFIRQEKTRSNFWLRRVMSYGTALITDVAPKTLEDYEQTTLESLAADSSNLIVPHEAVISLALRKEEQKPRKYDFFVRLTMRMQKEQFQVYDFEMSYQKSPNPETMIKFYMIPLGAYFKPRRQTQTREAILREYATDALGIFQRSSRPASYHPDTIPRRDVDPTSSESSTPALITRV
Ga0137415_100096878	F052525	GAG	LAPPKTPSDPRALKRKVSSQILQLPGVSGIGVPKGRLTVYLESDSEDVRERVREVLKTVSPEADVAFLVIGKFSKQDLD