Scaffold Ga0137415

Basic Information
Taxon OID	3300028536 Open in IMG/M
Scaffold ID	Ga0137415_10009496 Open in IMG/M
Source Dataset Name	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	9645
Total Scaffold Genes	14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	10 (71.43%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

9645

Total Scaffold Genes

14 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

10 (71.43%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Archaea

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	39.7291	Long. (^o)	-123.6419	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California

Coordinates

Lat. (^o)

39.7291

Long. (^o)

-123.6419

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F015710	Metagenome / Metatranscriptome	252	N
F016387	Metagenome / Metatranscriptome	247	N
F022177	Metagenome / Metatranscriptome	215	Y
F024389	Metagenome	206	Y
F035691	Metagenome	171	Y
F039560	Metagenome / Metatranscriptome	163	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0137415_1000949610	F035691	GAGG	LVELWKLNNLFKLFLLSFIAVFLFLIFVLNNILASRYLLIVLAAGTISYLVISFRVSPRASRTGIPEHRPRLTRTHLLAMVVIVSLFVSSYFLVRSLTAPSAFQLEKYRYLVLPNGTAFSMSPLQPNNECAWLESMNITTQERAKEQGLPDCDFVSWYHGTNPPILFLEFQNFTEFVYNLNATTVRTTGSELLCFSLSSQSFQCWMPPAAVSHLK
Ga0137415_1000949611	F015710	GAG	LNMDVENSVSTVIQNLDDANRSSAKVESTVRFYNLLSIVFFILAVISLSMLTLYLITDFIVLALGAMDIGTILNAVSRMISLRNVRDANERQRKAATTVKFFHAVSYACFGVAAIVFGIALNGLATDFAVMGLELTGCGTILRAVSRDLQLEGV
Ga0137415_100094962	F039560	N/A	LYHTRYKPNSIYAAAGAMESLVVSPTAEPRGSSDIGDEFFFLKLFLRHTIDSASRAGAAPIETEPFGVETRVERLGFYSTPVMNTVL
Ga0137415_100094964	F022177	GGCGG	LMEKTGEKIAENYKWTAFMKLKGQTWSRREEEILDEFDGFVQSLRGVGVDYNIIVMVEGGVPRQLHSDCNARETEAGIGREGSGA
Ga0137415_100094966	F016387	GAG	VTRTLRLDEDVEAGIVEMAEREQFSFNLLANRALRKLVEWEDKAGKFGFVQVPTSLVEKVFSILTDEEARELGREAGANTIPEMVLFWFKKFNPETALKALEMVGSYGNAFRLQYTIDGETDTVVLKHDRGPRVSAFYGEMFLSLFKPMGAKVETHETDGQIVATITRPPTSLGSEHRETPLIPKFPGAKNGRGYKR
Ga0137415_100094969	F024389	AGGA	LRKRYKIIAFAIFLTAIILAGVSAYVYSQYVPRVLADDTLTLKENHQWQFDLFVLGKRNVNITVSTVQYPVFVTFWYQQGFSATDYLFDKQVTNTTQAGFNVSVQQGGTYYLSVQKTEQYGENVTTVVHVAVIS

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0137415_10009496

Overview

Ecosystem & Geography

Associated Families

Sequences