Scaffold Ga0137415_10007570

Overview

Basic Information

• Taxon OID: 3300028536
• Scaffold ID: Ga0137415_10007570
• Source Dataset Name: Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10758
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (43.75%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 39.7291
  • Long. (^o): -123.6419

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000186	Metagenome	1702	Y
F009950	Metagenome	310	Y
F040544	Metagenome	161	Y
F079852	Metagenome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0137415_1000757011	F040544	N/A	LVEALNQPKPGRAKSFAGEGTVYWLIVSAILLVYLTFAVAVAAGSLYIAFTLVLAGVEAVLAYACWTLRKWGFLASTLSAIAVAGLAFGILYSPIGDLLLLLQLQVVLFAYRAHREPTNTAGRL
Ga0137415_1000757015	F009950	GGA	MKITLKADGRRLKPWKIADTVFHAEETIRAEHLHLVQKAHLVPQSERKKHDGKDIFEPGEVFFITTETEKGPVKVAHVHWKPIVDCGEHYRFLNPDGTLGERVTSAITVRKEF
Ga0137415_100075702	F079852	N/A	MFPDKAKMVRNANALLLMLVVAPVVYMVTAALVTFGKGGLARDPSIVPWLFFAFVVVSLVNIGTMVFFQTSKSFMSERGRYDPVGRTYLAMSTGAILAEAHAIYGLVLTLLSGSIFYAIGFSLVAWACLWWVRAKFKMNLGKLPNV
Ga0137415_100075704	F000186	N/A	MEHELALRLQDNRVNYLTQVEIPVTTADFYFPLESRSLIVFVDGPVHLKTAQMLKDEELRTLLLKRGYRILELSYSSYPDKKRDELYLEILNGLGK