Scaffold Ga0137415_10005889

Overview

Basic Information

• Taxon OID: 3300028536
• Scaffold ID: Ga0137415_10005889
• Source Dataset Name: Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12130
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 39.7291
  • Long. (^o): -123.6419

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000512	Metagenome / Metatranscriptome	1064	Y
F000696	Metagenome / Metatranscriptome	931	Y
F006480	Metagenome / Metatranscriptome	372	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0137415_1000588910	F006480	N/A	MRRALIGGTLLLFCGAIAARSKSDPLVFVFLRVDHKQDVAILRPMIAPDIGVQLDSGPRELKPGTVLQCASSLREHDAIVESQIAKVTDLVLDCGDHKFVVKSLDFSPRGK
Ga0137415_100058896	F000696	AGGA	MPVVGSSAYNTAGQITALVRSLLNDSQGNLFTDAVLLPYANSAYRKLQRALGNAGGGGFIQDDALLVVTAVPQADTSLQVSITDATAPPNQLPTDLLVPLKIWERRTGSTDEFVEMVDLTRHGGLPSRAQGLTLSVWEWRADGLYFLGATQDTQIRLRYLKAYPDFTDATSPVLVRNAQEAIAYATAALAGWARGSPLAEKWDDAAADAIEDLVSAAVRREQQSARRRRPFSARSGYTPF
Ga0137415_100058899	F000512	N/A	MILVVRETHDTPDAVAHRLERAGGINRFGEANYRAVWGWNRLAWIGGKFEDRDEHGALLRERIELRLEPKYPGVNRWHIERWLPPETYGSPRAWYAQTIERENGISIPALGPYPSRGEYEHCFTLESPRGQFIQLTPTAAEYIARAIEWSRKYPPAKNRRRLYDREQRAETNYEQWAFDVMDDAVPAFHKQPFVTAV