Scaffold Ga0137415_10004362

Overview

Basic Information

• Taxon OID: 3300028536
• Scaffold ID: Ga0137415_10004362
• Source Dataset Name: Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14008
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (64.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 39.7291
  • Long. (^o): -123.6419

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021746	Metagenome	217	Y
F024279	Metagenome / Metatranscriptome	206	Y
F081127	Metagenome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0137415_1000436211	F081127	GGAG	VVGAIAFACDRSPTAVPIPTALAARSQPGPSKKSGLIPCAQSYDSVTELIGRQGGAFPVGPHYVFVDSLALRDTVRITVVAPAGAVRWVRFRPDGLVFQTTVDGWSALLYTNYKDCGVPTSDTLRIAQVSDSLRVLGYLQTFVKSKKNPWSQGTQFVVGLLPHFSNYAVAW
Ga0137415_1000436213	F021746	GGAG	MQLPARVSWTPSHTALASAFLVTLLIDAGQTRELARQGWVGFRESNPLLGERPSVGRVNSYTALAGLSVLGAAAAAPPRLRPWLLGAAIAVQAFTIQSSVRQGIPIRFP
Ga0137415_100043623	F024279	GGAG	MRERALVLALLVCTAAPAATQESVDTALTIQGFLQRDNEFDVWTIVVPLPLRVLGTRTYVVPVVGKPERWGRYLNRYIEASGRVTRLPERGNPSIGMEVENAKELDPPGTARATVDKGVTLHADITLSVIPNRFSWKDDAGSPTGVNPMLVYTILNRRAAPIFFILQNNRFLCITVKSHEGVTVWDTTTIVPSPDARRFTMQRGGRFRDAIHFPEEAAARPGHYYVHVGICDVDDYDITAEFDVR