Scaffold Ga0257112_10003962

Overview

Basic Information

• Taxon OID: 3300028489
• Scaffold ID: Ga0257112_10003962
• Source Dataset Name: Marine microbial communities from Northeast Subartic Pacific Ocean, Canada - LP_J_2015_P26_1000m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5569
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → unclassified Nitrosopumilus → Nitrosopumilus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Canada: Northeast Subartic Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0
  • Long. (^o): -145.0
  • Depth (m): 1000

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010325	Metagenome / Metatranscriptome	305	Y
F013774	Metagenome / Metatranscriptome	268	Y
F029469	Metagenome / Metatranscriptome	188	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0257112_100039622	F010325	AGGA	MLRKQMVSDRLDQLQLAVERLKSSLVVPTDPGDVVTPTEVIIQQLQQIENQIDQIVNLIELED
Ga0257112_100039624	F013774	AGG	LNEKLLELKRKKLQRQILYLRTELEETTFIFQDCLIEFEGEFRDYFKNQSNKDHKKVTTDPPEFDIPREDVNIVFRMIAQKTHPDKLVKEDTLSSTYKEKVDMYKEALGSVDNKDWSRVIEIAMELGIDVSDVKTDDSDYLNESIKGLTGKIKELKSTYAWAWYHTEDKNQAKQMILQSLGLSDK
Ga0257112_100039625	F029469	AGGAG	MSSKPEHTTYFIEIIRRLKEMEVEFRKAPKQPDDKIYGEMDDKIELMELPFPPEMFDRLSSDEKETLYIWLNRSNMPQA