Basic Information | |
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Taxon OID | 3300028489 Open in IMG/M |
Scaffold ID | Ga0257112_10002869 Open in IMG/M |
Source Dataset Name | Marine microbial communities from Northeast Subartic Pacific Ocean, Canada - LP_J_2015_P26_1000m |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 6510 |
Total Scaffold Genes | 18 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 10 (55.56%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean |
Source Dataset Sampling Location | ||||||||
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Location Name | Canada: Northeast Subartic Pacific Ocean | |||||||
Coordinates | Lat. (o) | 50.0 | Long. (o) | -145.0 | Alt. (m) | Depth (m) | 1000 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F033843 | Metagenome / Metatranscriptome | 176 | Y |
F040143 | Metagenome | 162 | Y |
F080155 | Metagenome | 115 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0257112_1000286915 | F040143 | GAG | MREEWKLFTGWLILVILLLLSGCTNAPNGAFNIPYKQPIRYELIEPLGTKHLYREQPLVDKSYYCFIHEAPEIIWEDRGTMKVRTYTGPKW |
Ga0257112_100028697 | F033843 | N/A | MKIRKTIYWIVGLFVFFGWVDLVWGQTEKWSGESVTLYTTLAGLSMIDAKQTFMMDEYRSYFDEIEPITYAHEVNPLMGESPTNDRIVAVKLLSGALTFYGLNKMKEVNRKKALTWLNVFYLIVVIHNNSLGLSINL |
Ga0257112_100028698 | F080155 | AGGA | MIHTYLSLEYIAIVLFGLIMVLFSIGSFYLSNVDEDKNED |
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