Scaffold Ga0257113_1063463

Overview

Basic Information

• Taxon OID: 3300028488
• Scaffold ID: Ga0257113_1063463
• Source Dataset Name: Marine microbial communities from Northeast Subartic Pacific Ocean, Canada - LP_J_2015_P26_1320m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1173
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Canada: Northeast Subartic Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0
  • Long. (^o): -145.0
  • Depth (m): 1320

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017718	Metagenome / Metatranscriptome	239	Y
F052651	Metagenome / Metatranscriptome	142	Y
F087333	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0257113_10634631	F052651	N/A	ELEIMEKNDNYFNEKSEAEKLRNVSNLVNDIVNAKPEESLEVQEAGIDEGDGTEGMEPEVDPLVDLVGKAISAGKPKEFFMQGVQTDEHPKL
Ga0257113_10634632	F017718	AGGAG	MSTQNYDSALELVKERLEQIDKIKNKFSGFPEVQEKLKNVKDSLIESEEELIISEKHNKS
Ga0257113_10634633	F087333	AGGAG	MSLWGMNDGAALSGAAKFTNGAATFIDGSSGSNTTFTTDKLEAGDCVIGADGLLYRITAVASQTAATLDRDYEGSTANNQTVIRLKLPRHIKITNDDGTGKSIQDLGVLGITGAERSAGVDNLSAVGEVLVGSCHRTVPAVTVAAPSTNTIATAKVVVADNTIGITNHGFRTGTKLTYSNGSGSSITGLSETAYYVIAKETTDS