Scaffold Ga0257113_1044950

Overview

Basic Information

• Taxon OID: 3300028488
• Scaffold ID: Ga0257113_1044950
• Source Dataset Name: Marine microbial communities from Northeast Subartic Pacific Ocean, Canada - LP_J_2015_P26_1320m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1432
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Canada: Northeast Subartic Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0
  • Long. (^o): -145.0
  • Depth (m): 1320

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020372	Metagenome / Metatranscriptome	224	Y
F042386	Metagenome / Metatranscriptome	158	N
F058211	Metagenome / Metatranscriptome	135	Y
F099450	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0257113_10449502	F058211	N/A	MPIPIENNSWDYVQGLIEKEINSAFKLRITEEDDKMKFEKDHPYMKRLDETLKQYSVVKVADGNGAHHGADFEEMKQVILDALFMRYAGETIRK
Ga0257113_10449503	F020372	GGA	MKEEKNLATVRIYIDGKEMLYSHQNMVAAINSFLPYLTNDDLTELMKTFHTLKDHRRQKEYLSKLETLKHSWPYPDTIQQPEND
Ga0257113_10449504	F042386	N/A	MNNAGLPTTYQEGETGQFELFHDSTPYLKEGNGVPKFFTLADVERKLGGLGEY
Ga0257113_10449505	F099450	N/A	EQQENTDKEVSDDETWIAVVLTWNPVVRTIDKEFSSEVECWNFYEGGTGESRFGEQHRDHQGNLPTKDSHFGPDYLEYPIRTYRGINDEQGSVWLTCDLKGRYEDL