NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0257113_1024262

Scaffold Ga0257113_1024262


Overview

Basic Information
Taxon OID3300028488 Open in IMG/M
Scaffold IDGa0257113_1024262 Open in IMG/M
Source Dataset NameMarine microbial communities from Northeast Subartic Pacific Ocean, Canada - LP_J_2015_P26_1320m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2015
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexi incertae sedis → SAR202 cluster → SAR202 cluster bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location NameCanada: Northeast Subartic Pacific Ocean
CoordinatesLat. (o)50.0Long. (o)-145.0Alt. (m)Depth (m)1320
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010477Metagenome / Metatranscriptome303Y
F017222Metagenome242Y
F026028Metagenome / Metatranscriptome199Y

Sequences

Protein IDFamilyRBSSequence
Ga0257113_10242624F026028GAGMSVCVNCYHRIRHSNVIEVGQLWNNEPYLAVVCSDKCKDEIEKKVTDGTWMVMRSFPKTESDDGLPTALTDKQFGV
Ga0257113_10242625F010477GGAGMKLRYAIFVPYLIFIGMMGGNVLVDALVIGLVLAMYDFFFGNGGGGRPA
Ga0257113_10242626F017222N/AMEIKLYARNIDNKLRTALYAMTSFAMAELVPSKRLRNNISINVHLKHHEEDGEAMLEEYANRYRPRDFKVIIDHHRAEIDDYGRTRTDTEWGHTILRILAHELVHVKQYLVGDLSWRDKGMLWRGELFTPKYL

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