NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0268337_1002781

Scaffold Ga0268337_1002781


Overview

Basic Information
Taxon OID3300028469 Open in IMG/M
Scaffold IDGa0268337_1002781 Open in IMG/M
Source Dataset NamePhyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R2_NF_07AUG2017_LD1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)885
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Phyllosphere → Phyllosphere Microbial Comminities From Bioenergy Crops Switchgrass And Miscanthus From Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)42.39Long. (o)-85.37Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005624Metagenome / Metatranscriptome394Y
F026476Metagenome / Metatranscriptome197Y

Sequences

Protein IDFamilyRBSSequence
Ga0268337_10027811F005624N/ASFYFQKVQQHKIPSPLAKVVADTPVNLRSKGFRCPSLIWIEPVRIEILEFPIRSTRKEDECVILKFSPLRFSDSEPRDPIFISLPCAEALDQEGNEEAP
Ga0268337_10027812F026476GGAMGPNFLKFTVYESARSRRRGGGTVNLVENSQLIIILSFHTYGLVGFSLFPKGPTAQDSESSSESCGRYTGEPAFRRFLLSFLDLGRTDKG

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