Scaffold Ga0256397_1010687

Overview

Basic Information

• Taxon OID: 3300028436
• Scaffold ID: Ga0256397_1010687
• Source Dataset Name: Seawater viral communities from deep brine pools at the bottom of the Mediterranean Sea - Kryos LI F3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 968
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 34.9283
  • Long. (^o): 22.0216
  • Depth (m): 3337

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006867	Metagenome / Metatranscriptome	363	Y
F022282	Metagenome	215	Y
F105878	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0256397_10106872	F022282	GAG	MSNPFRYQLGDLVEFKKTKRTTEEYIDLVTLTGIVIKQRYVFTADNKFKVRTPDQDYWIRSDHLKLLSSGNKNKT
Ga0256397_10106873	F006867	AGGAG	MPLQGKELLKSIQKRCRIQPGMLIKSGAGTEISKIALVVGLSPSCEYVRDYEEAEEHIFYKCEPFDGSPPFVDYVCNMEQVS
Ga0256397_10106874	F105878	GGAG	MKVGQIIKLKESGLASFDPGIRAKLEGEIGLVIQEKYDLSHKLDQDKLPERVKVYPSLVRFESLQGMNFLDMGAVMVFPDQAEVLS